Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0310.Seq
         (284 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76500.1 68414.m08901 DNA-binding family protein contains Pfa...    29   0.50 
At4g08240.2 68417.m01360 expressed protein                             28   0.87 
At4g08240.1 68417.m01359 expressed protein                             28   0.87 
At5g45350.1 68418.m05567 proline-rich family protein contains pr...    28   1.2  
At4g26190.1 68417.m03770 expressed protein                             28   1.2  
At5g56980.1 68418.m07112 expressed protein non-consensus CG dono...    22   7.1  
At5g03415.1 68418.m00294 DPB-1 transcription factor, putative (D...    25   8.1  
At4g31050.1 68417.m04409 lipoyltransferase (LIP2p) identical to ...    25   8.1  
At4g01250.1 68417.m00164 WRKY family transcription factor contai...    25   8.1  
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ...    25   8.1  
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi...    25   8.1  
At2g28960.1 68415.m03523 leucine-rich repeat protein kinase, put...    25   8.1  

>At1g76500.1 68414.m08901 DNA-binding family protein contains Pfam
           domain, PF02178: AT hook motif
          Length = 302

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 174 QLGEDLQSHPDMHPLPQPTSQ 236
           +L   LQ  P +HPLPQP  Q
Sbjct: 22  ELHHQLQPQPQLHPLPQPQPQ 42


>At4g08240.2 68417.m01360 expressed protein
          Length = 136

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 177 LGEDLQSHPDMHPLPQPTSQRTADDLDTAPVSVAR 281
           LG++    P  HP P+ +S+  +DD  + P+ + R
Sbjct: 18  LGDETGHSPQNHPNPEVSSKSYSDDTISGPLDLTR 52


>At4g08240.1 68417.m01359 expressed protein
          Length = 136

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 177 LGEDLQSHPDMHPLPQPTSQRTADDLDTAPVSVAR 281
           LG++    P  HP P+ +S+  +DD  + P+ + R
Sbjct: 18  LGDETGHSPQNHPNPEVSSKSYSDDTISGPLDLTR 52


>At5g45350.1 68418.m05567 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 177

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 185 GPPESP*HASTPPANFPAH 241
           G P +P H   PPA +PAH
Sbjct: 78  GYPPAPGHGGYPPAGYPAH 96


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 102 SRSRMTSRRLYNISCLETM*EEIFQLGEDLQSHPDMHPLPQPTSQRTADDL 254
           S+ R   ++  ++SC E + +E+ ++  + Q HP  +PL     Q  + +L
Sbjct: 137 SKRREKKKKKEDLSCEEKLLDEVEKITSEDQVHPPNNPLSNGMVQERSGEL 187


>At5g56980.1 68418.m07112 expressed protein non-consensus CG donor
           splice site at exon 1, GA donor splice site at exon 3
          Length = 379

 Score = 22.2 bits (45), Expect(2) = 7.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 195 SHPDMHPLPQPTSQRTADDL 254
           SH D+HP P P   + A  L
Sbjct: 143 SHLDLHPDPAPAPLQRAPSL 162



 Score = 21.4 bits (43), Expect(2) = 7.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 177 LGEDLQSHPDMHPLP 221
           +G DL  +PD +P P
Sbjct: 93  IGSDLHVYPDPNPAP 107


>At5g03415.1 68418.m00294 DPB-1 transcription factor, putative (DPB)
           similar to Swiss-Prot:Q14186 transcription factor DP-1
           [Homo sapiens];  contains Pfam profile PF02319:
           Transcription factor E2F/dimerisation partner (TDP)
          Length = 385

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 192 QSHPDMHPLPQPTSQRTADDLDTAPV 269
           Q H  +  +P P +       DTAPV
Sbjct: 343 QQHSQLQIIPMPETNNVTSSADTAPV 368


>At4g31050.1 68417.m04409 lipoyltransferase (LIP2p) identical to
           lipoyltransferase (LIP2p) [Arabidopsis thaliana]
           GI:15887052; supporting cDNA gi|15887051|dbj|AB072390.1|
          Length = 278

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 172 FNLERTSRVTLTCIHSPSQLPSAQLMILTPHQCLLH 279
           FN+ RT R      H P QL    ++ L  H+  LH
Sbjct: 114 FNVYRTERGGEVTYHGPGQLVMYPIINLRNHEMDLH 149


>At4g01250.1 68417.m00164 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 298

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 38  CSIQSMKLDTLVYXPGSSGRSQPI 109
           CS  S    T VY PG S  + PI
Sbjct: 14  CSAVSSSATTTVYSPGVSSHTNPI 37


>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
           SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
           Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
           domain
          Length = 487

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 273 QTLVRCQDHQLCAGKLAGGVDACQGDSGGPLQ 178
           +T ++CQ H L  G +   V   +G SG  LQ
Sbjct: 393 KTKLKCQPHSLSDGDIDKIVKETEGYSGSDLQ 424


>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase from [Solanum
           tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
           [Hordeum vulgare] GI:21314275, [Oryza sativa]
           GI:3252794; contains Pfam profiles PF00128: Alpha
           amylase catalytic domain, PF02922: Isoamylase N-terminal
           domain
          Length = 783

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 102 CDLPELPGXYTRVSSFIDWIEQNVWPTVHQSAL 4
           C  P+LP   T +  +  +++ NV+P +  S++
Sbjct: 741 CITPDLPERETAMKQYRHFLDANVYPMLSYSSI 773


>At2g28960.1 68415.m03523 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 880

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 145 ALRRCRKRYFNLERTSRVTLTCIHSPSQLPSAQLMILTPHQC 270
           ALR    R F++E    + +   +SP+ L S     L+PH+C
Sbjct: 283 ALRGNETREFDIELEEDI-IQSAYSPTMLQSDTKYNLSPHKC 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,149,900
Number of Sequences: 28952
Number of extensions: 144163
Number of successful extensions: 441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)