Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0307.Seq
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.6  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    27   2.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   4.8  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    26   4.8  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.4  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 571 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 705
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 344 YATPLMSPYNARLESSSTGSSFPADSPKPVPWL 246
           Y  P+ SPY++    SST SSF   SP   PWL
Sbjct: 132 YKKPV-SPYSSSSAVSSTSSSFDRTSP---PWL 160


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
 Frame = -1

Query: 585 SLTDVPPQSNSPPGSVLEPD-----HAGVLKATSVSATSPLCTLGTKHRAPADIIDRAPL 421
           S+T   P   SP    +EP      HAG L+ TSVS      T+    +   D  D    
Sbjct: 587 SITPADPVPTSPKPLAIEPVKRKPVHAGNLEVTSVSDNKLGATVQVVEQKVDDKADALTK 646

Query: 420 PPN 412
           PP+
Sbjct: 647 PPS 649


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 210 IPTVPIYYLAKPQPRNGLGRI 272
           IPT+ + Y  K +PRNG G I
Sbjct: 145 IPTIEMLYALKFKPRNGTGVI 165


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 688  SPYAY*TSGSSQLLPFCSTRGF 623
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 162 GYLKRVIVTPAVYPRLLEFLHVDIQST 82
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,004
Number of Sequences: 5004
Number of extensions: 62175
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)