Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0307.Seq
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    36   0.044
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.2  
08_02_1609 - 28213071-28213796                                         29   2.9  
01_01_0613 - 4571689-4572348                                           29   2.9  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   5.0  
07_03_1623 - 28196981-28197532,28197667-28198058,28198472-281986...    28   6.6  
01_06_1105 - 34559694-34559852,34560298-34560312,34560451-345605...    28   8.8  

>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = -1

Query: 654 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLKATSVSATSPLC 475
           +F P+ P     LA  + GH R+ + D   +  S  G   + D +  ++  +VSA + LC
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELSLAGIFNKGDRSYAVRRAAVSAYAALC 425

Query: 474 TLGTKHRAPADIIDR 430
            +   H AP  + DR
Sbjct: 426 AVLCAHEAPGGLPDR 440


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 180 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 79
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>08_02_1609 - 28213071-28213796
          Length = 241

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 189 AHEWINEIPTVPIYYLAKPQPRNGLG 266
           +H+     P +P ++LA  QPR GLG
Sbjct: 45  SHQTARPTPPLPSFFLAADQPRRGLG 70


>01_01_0613 - 4571689-4572348
          Length = 219

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -1

Query: 609 LALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLKATSVSATSPLCTLGTKHRAPADIID 433
           L LGH  YSL   PP S     +    D  GV  ++S +AT+    +G + R+  +++D
Sbjct: 51  LELGHSVYSLPLPPPPSQPVVVAGGNNDQYGVSSSSSAAATT--SRIGFRTRSEVEVLD 107


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 484 TTLHAWNETPCARRYY 437
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>07_03_1623 -
           28196981-28197532,28197667-28198058,28198472-28198661,
           28198773-28198972,28199733-28199838
          Length = 479

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 238 RNHSQGTGLGESAGKEDPVELDSSLAL 318
           ++HS+G G G S+G+ D +++   LAL
Sbjct: 417 QDHSEGYGSGSSSGRNDGLDVPELLAL 443


>01_06_1105 -
           34559694-34559852,34560298-34560312,34560451-34560522,
           34560695-34561549
          Length = 366

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 573 VPPQSNSPPGSVLEPDHA-GVLKATSVSATSPLCTLGTKHRAPADIIDR 430
           VP   N  PG++LEP ++ G   +  +   S   T G K     D+ D+
Sbjct: 213 VPQPLNVGPGAILEPSYSDGQTSSGMIGGMSDSQTPGRKRGMSGDVADK 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,065,187
Number of Sequences: 37544
Number of extensions: 468099
Number of successful extensions: 1447
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)