Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0307.Seq
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z49127-3|CAA88946.1|  523|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    28   5.9  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical
           protein C14B1.9 protein.
          Length = 558

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = -1

Query: 636 PREVSVLAELALGHLRYSLTDVPPQSNSPPGSVL-EPDHAGVLKATSVSATSPLCTLGTK 460
           P+++S+    ++G    +  ++P Q NSP  +V  E D    L A S + ++       K
Sbjct: 252 PKKISLDKPKSVGSPSNAHNEIPSQKNSPKSAVKNETDTEDALMAKSGNLSTAAVMFKNK 311

Query: 459 -HRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 349
            H      +D    P N    ET+  ++ +   ++ ++
Sbjct: 312 VHTLQCQFLDSHGNPQNTPDFETLSKILSEHFDKKELT 349


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 377  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 258
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 377  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 258
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 374 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPADSPKPVPW 249
           +DD   R P + +     L  PY +   SSS+ SS P+D P P P+
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSD-PAPRPY 725


>Z49127-3|CAA88946.1|  523|Caenorhabditis elegans Hypothetical
           protein F13D12.4a protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 565 PVKLPAWQCPRTGSRGSFKGDERFRHVTTLHAWNETPCARRYYRPRTASAQP 410
           PV LP +    TGSRGSF GD  F     +  + +     +Y+       +P
Sbjct: 466 PVPLPMFSF--TGSRGSFLGDLNFYGKAGIQFYTQWKTVTQYWNESLTELKP 515


>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 9   ESDCLIKSKHCDGPRGC*RNVISAQCSECQREEIQASAGKR 131
           ++ CL  S+ CDG   C        C +C     + SA K+
Sbjct: 428 DNKCLESSRRCDGVWDCEDKSDEKGCDKCPSRSFKCSADKK 468


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -1

Query: 471 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 337
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,002,861
Number of Sequences: 27780
Number of extensions: 360088
Number of successful extensions: 1038
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)