Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0307.Seq
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.60
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 31 0.60
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 31 0.79
At3g03650.1 68416.m00368 exostosin family protein contains Pfam ... 30 1.8
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 4.2
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 4.2
At2g47390.1 68415.m05915 expressed protein 29 4.2
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 29 4.2
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 7.3
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 7.3
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 9.7
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 9.7
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 9.7
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.5 bits (68), Expect = 0.60
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -1
Query: 513 LKATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYT 334
L V S LG +H PA +I+R P PP +S +++++F E +CY
Sbjct: 217 LDTEDVLLVSAKTGLGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYV 274
Query: 333 SHV 325
S V
Sbjct: 275 SVV 277
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = -1
Query: 585 SLTDVPPQSNSPPGSVLEPDHAGVLKATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 406
S T PP S +PPG P + + ATSP ++ K +P P PP
Sbjct: 169 SPTTSPPGSTTPPGGAHSPKSSSAVS----PATSPPGSMAPKSGSPVSPTTSPPAPPKST 224
Query: 405 S 403
S
Sbjct: 225 S 225
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 610 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIKE 726
LS R W RAK L+Q+ TH+ E T+Y+S ++E
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELRE 318
>At3g03650.1 68416.m00368 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 499
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/87 (29%), Positives = 40/87 (45%)
Frame = -1
Query: 561 SNSPPGSVLEPDHAGVLKATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVV 382
S++ P VL DH V ++T V PL + + +P + AP P NR ET + +
Sbjct: 37 SSTNPNRVL--DHISVSESTDV----PLIIIKNSNSSPQN---NAPKPQNREGAETEEPI 87
Query: 381 VFQRRSRETISHLCYTSHVSLQCQTRV 301
R +T S + +L+C RV
Sbjct: 88 KENRGGTKTESSMNQNRGETLRCIQRV 114
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 144 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 34
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 144 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 34
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -1
Query: 519 GVLKATSVSATSPLCTLGTKHRAPA----DIIDRAPLPPNRVSNETMKVVVFQRRSRETI 352
G L A++ + +GT +R P DI+D P+P S K++ +RR+ +
Sbjct: 90 GSLSASATATEDDELAIGTGYRLPPPEIRDIVDAPPVPALSFSPHRDKILFLKRRALPPL 149
Query: 351 SHL 343
+ L
Sbjct: 150 ADL 152
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 156 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRNGLGRISGER 284
G +P + +SD + INE+ P + NGL + G+R
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKR 112
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 435 DRAPLPPNRVSNETMKVVVFQRRSRET 355
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 486 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 349
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 426 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 316
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 426 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 316
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 474 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 379
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,317,126
Number of Sequences: 28952
Number of extensions: 347815
Number of successful extensions: 1066
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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