Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0305.Seq
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 29 0.45
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.60
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 28 1.4
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 3.2
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 4.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.2
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.6
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 26 5.6
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 7.4
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 9.7
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.7
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 9.7
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 9.7
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 29.5 bits (63), Expect = 0.45
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 433 SGCSRCRVWSMFVRYVRFSELVF*YMRPQKLYIF 534
+GC + VW +VR+V F E + LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.60
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 616 ARKIRGRPENAGPDPVRNVRRFSRV 542
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 645 ARNETDTTLRLGRSAEGRRTRVRIQSE-T*DDFRECHIKYIQFLRPHILKY*LAKTNITH 469
A E +R G+S + R+ ++ D F +KY +F+RP L+ K N+TH
Sbjct: 128 AEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQ--KKANVTH 185
Query: 468 E 466
+
Sbjct: 186 K 186
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 459 VDVRALCSF*RVSILIYAASKTVYI*YDTRENRLT 563
+DVR L SF + LIY K Y+ T N LT
Sbjct: 330 LDVRRLISFGTIKGLIYRVHKYPYLERRTMRNNLT 364
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 4.2
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = -2
Query: 372 SNLPTSLTYIILSTRGSSPWRPAADMGTNQSDISTYIPHRIFKVRREYPDTAANAVLFAF 193
S TSL+ R S+P R D G++++ +TYIPH K ++ +A
Sbjct: 212 SEKDTSLSRRSSRGRSSAPKR-RKDSGSSKTT-ATYIPHNPSKKSSQHLPLLPDASFELE 269
Query: 192 RTISPFYRIP 163
R++S Y+ P
Sbjct: 270 RSVSRSYQSP 279
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -3
Query: 278 TSQRTSLTEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPD--LSAAS 105
T + S TE+ + S +TP + + S G+ ++ Q R +FP+ L
Sbjct: 376 TEENDSTTEYVNTESSSKTPAPHKHTFNSCYQKKDYGYIPEVSVEQNRHIFPEWMLPDKR 435
Query: 104 SGHFGLPR 81
S +G P+
Sbjct: 436 SHSYGSPK 443
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = -2
Query: 315 WRPAADMGTNQSDISTYIPHRIFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 142
W M S STY P V D N F I+P+Y WN A A
Sbjct: 243 WARPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 212 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 75
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 389 YSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTRATSQRTSLTEFSRSAESIRTPPQM 210
Y + + L +P+L RL A+HLG +I ++ Q TS T + + TPP +
Sbjct: 1093 YKAKSSLLVTLKIPSLIPRLRAIHLGK-GKIVIKKAPLKQITSKT---KEKSTSPTPPSI 1148
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 259 SPNFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 98
+P + P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 71 RVFDGVTQSGLKTPPRGPGRV 133
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +1
Query: 7 PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 165
PV + G TV+ P+S+ + +P+ P A+ + CL + W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 71 RVFDGVTQSGLKTPPRGPGRV 133
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 585 RVRIQSET*DDFRECHIKYIQFLRPHILKY*LAKTNITHE 466
+V + S+ D +E H+KY+Q + L+ LAK +I E
Sbjct: 1069 QVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,396
Number of Sequences: 5004
Number of extensions: 61063
Number of successful extensions: 192
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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