Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0305.Seq
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1013 - 7931756-7935109 33 0.27
06_01_0350 + 2534422-2535615 31 1.1
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 30 1.4
12_02_0407 - 18654134-18654172,18654913-18655803 30 1.9
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.5
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 29 2.5
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 3.3
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378... 29 4.4
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 4.4
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 29 4.4
03_05_1013 + 29680057-29680226,29682272-29682417,29683417-296834... 29 4.4
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 28 5.8
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744... 28 7.6
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 32.7 bits (71), Expect = 0.27
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 295 GYEPERHLNVHPSPNFQGPQRVSGHR 218
G+EP+R + +HP+P + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 165 PWNSNAQAEKKTLPGPLGGVFRP 97
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Frame = -3
Query: 470 TNIDQTRH--RL----HPLPVQTRHAPVLRANP 390
T IDQ H R+ H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 22 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 186
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 440 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 351
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 271 NVHPSPNFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENS 128
N H SPN G Q ++G+ + G + +H + S E+ R +E+S
Sbjct: 159 NEHASPNVTGVQVITGYCSEAGVINCASHSDEI--SKEVGRPAEREDS 204
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -3
Query: 263 SLTEFSRSA--ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 90
S E SR++ + I+ P M S + + GFHG L+ KL PDL + HF
Sbjct: 175 SKQESSRASPMKLIKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFN 231
Query: 89 LPRRTLVFKDEGTI 48
LVF G I
Sbjct: 232 PATNQLVFPGRGAI 245
>12_02_0969 -
24936399-24936699,24936779-24936949,24937032-24937852,
24937946-24938407,24938486-24938890
Length = 719
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 268 VHPSPNFQGPQRVSGHRRKCGALRVP 191
VHP+P Q S HR C ++ VP
Sbjct: 248 VHPTPRAQHDTNPSHHRSSCASIEVP 273
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 434 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 321
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 326 ALHLGDLLRIWVRTRATSQRTSLTEFSRSAESIRTPPQMRCSSRSEP 186
A H G I VRT + TS + A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
>03_05_1013 +
29680057-29680226,29682272-29682417,29683417-29683493,
29683577-29683699,29683781-29683849,29684824-29684925,
29684998-29685078,29685161-29685313,29685442-29685513,
29685773-29685936,29686046-29686091,29686268-29686337,
29686509-29686594
Length = 452
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/99 (23%), Positives = 39/99 (39%)
Frame = -3
Query: 464 IDQTRHRLHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRT 285
+D+ RL P P+ + L YS +++P R + YR LL IW+
Sbjct: 268 LDKCAGRLIPKPINGVSSRAL-LEEYSRLSEPTARPTINCFSYRFY------LLNIWMND 320
Query: 284 RATSQRTSLTEFSRSAESIRTPPQMRCSSRSEPYLPSIG 168
+AT + + + S CS + +P +G
Sbjct: 321 KATRDALKIKKLESYSTSYNYYQLSWCSGDHDLMVPFLG 359
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = -3
Query: 425 QTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTRATSQRTSLTE 252
+ RH P++ + EV+ + L L Y ++ L + +LL +W + L+E
Sbjct: 100 ELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVWRRRRMLGLSE 157
>12_02_0096 -
13573612-13573632,13573846-13573884,13574160-13574493,
13574660-13574830,13574913-13575730,13575812-13576114,
13576352-13577085,13577174-13577303
Length = 849
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 268 VHPSPNFQGPQRVSGHRRKCGALRVP 191
VHP+P Q S HR C + +VP
Sbjct: 348 VHPTPRAQHDASPSQHRSSCASTKVP 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,133,445
Number of Sequences: 37544
Number of extensions: 459655
Number of successful extensions: 1577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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