Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0305.Seq
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF016664-11|AAK72083.1|  204|Caenorhabditis elegans Hypothetical...    29   3.9  
U53148-2|AAB37078.1|  360|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical
           protein C38H2.1 protein.
          Length = 863

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 484 NEHNARTSTRPGTGCIRFPSKPDTPRSSEPILIPKLRIQFADFPYLH 344
           ++      TR G+ C    S+PD P     +L+ KL+I+  +    H
Sbjct: 43  HDEGCERMTRNGSVCAVEESEPDVPTQHREVLLTKLKIEIKNIMAEH 89


>AF016664-11|AAK72083.1|  204|Caenorhabditis elegans Hypothetical
           protein D2062.1 protein.
          Length = 204

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 243 P*KFGEGCTLRCRSGSYPYPQQVSK 317
           P K+GE   + C+SG +P PQ +++
Sbjct: 95  PRKYGENVAMFCQSGCWPLPQTLAQ 119


>U53148-2|AAB37078.1|  360|Caenorhabditis elegans Hypothetical
           protein C26F1.6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 287 TRATSQRTSLTEFSRSAESIRTPPQMRCSSRSEPYLPS 174
           T ATS RT +T +  S  SIR       SS +  Y PS
Sbjct: 316 TEATSNRTMVTRYKESMISIRGTSTRLSSSHNLLYKPS 353


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -2

Query: 246 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 118
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 230 IRTPPQMRCSSRSEPYLPSIGFHGT 156
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 206 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVP 33
           C++   P+L  I    T+ +RQ   + P+L +A   H       + FK E     T+P
Sbjct: 80  CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,217,572
Number of Sequences: 27780
Number of extensions: 356222
Number of successful extensions: 1210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)