Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0305.Seq
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   3.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   3.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.0  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 307 CCGYGYEPERHLNVH 263
           CC   Y  ERH+ +H
Sbjct: 93  CCRESYLKERHITLH 107


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 307 CCGYGYEPERHLNVH 263
           CC   Y  ERH+ +H
Sbjct: 93  CCRESYLKERHITLH 107


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 125 PDLSAASSGHFGLPRRTLVFK 63
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 194 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 111
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,870
Number of Sequences: 438
Number of extensions: 4918
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)