Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0305.Seq
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          30   1.2  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    30   1.6  
At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containi...    30   1.6  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   3.6  
At5g42370.1 68418.m05159 expressed protein                             29   3.6  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   3.6  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    29   3.6  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    29   3.6  
At5g16970.1 68418.m01988 NADP-dependent oxidoreductase, putative...    28   4.8  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   4.8  
At5g22390.1 68418.m02612 expressed protein                             27   8.4  
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    27   8.4  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 454 PGTGCIRFPSKPDTPRSSEPILIPKLRIQFAD 359
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 585 RVRIQSET*DDFRECHIKYIQFLRPHI 505
           R+RIQ     DF + + K+++FL PHI
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPHI 198


>At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containing
           protein 
          Length = 964

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
 Frame = -2

Query: 408 GPQSQSLFRSYGSNLPTSLTYIILSTRGSS---PWRPAADMGTNQSDISTYIPHRIFKVR 238
           G Q       Y S  P S +Y    T GS+   P  P A  G   S +S Y P R  +V 
Sbjct: 519 GSQKSQYGLPYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRGEVN 578

Query: 237 REYPDTAAN 211
             YP    N
Sbjct: 579 MRYPAATRN 587


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 241 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 107
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 180 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 70
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 43  SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 174
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 463 STRPGTGCIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 344
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 463 STRPGTGCIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 344
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g16970.1 68418.m01988 NADP-dependent oxidoreductase, putative
           (P1) identical to probable NADP-dependent oxidoreductase
           P1, zeta-crystallin homolog [SP|Q39172][gi:886428],
           Arabidopsis thaliana; similar to allyl alcohol
           dehydrogenase [Nicotiana tabacum] GI:6692816; contains
           Pfam profile PF00107: oxidoreductase, zinc-binding
           dehydrogenase family
          Length = 345

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 585 RVRIQSET*DDFRECHIKYIQFLRPHI 505
           R+RIQ     DF + + K+++F+ PHI
Sbjct: 278 RIRIQGFVVSDFYDKYSKFLEFVLPHI 304


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 236 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 138
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 115 ERSGKSFLFCLSVRVPWNPIEG 180
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 585 RVRIQSET*DDFRECHIKYIQFLRPHI 505
           R+RIQ     DF E + K++ F+ PHI
Sbjct: 278 RIRIQGFAVFDFYEKYSKFLDFVLPHI 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,638
Number of Sequences: 28952
Number of extensions: 341901
Number of successful extensions: 1020
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)