Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0304.Seq
         (662 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96205 Cluster: Putative uncharacterized protein PFB056...    36   1.1  

>UniRef50_O96205 Cluster: Putative uncharacterized protein PFB0560w;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PFB0560w - Plasmodium falciparum
            (isolate 3D7)
          Length = 3990

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -3

Query: 645  ENYFTPENSGYLSPRPFQVCEICRYQTHIILNEVAN*LS*ISATYYMRKTC-LDVTKNIL 469
            ENY++ +NS YL  +  + C  C     ++ +EV N        +Y+ K C  DV KN  
Sbjct: 3240 ENYWSKQNSYYLHLKDIKKCRTCLNYQRLLFHEVIN-----LFVFYVYKFCNWDVLKNYF 3294

Query: 468  LYLIRLYQESQT*TSEHILDL 406
              LI   +E+     EH  ++
Sbjct: 3295 DILINGSEEAIIKVLEHFRNI 3315


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,580,339
Number of Sequences: 1657284
Number of extensions: 9619881
Number of successful extensions: 13756
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 13384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13755
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)