Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0304.Seq
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   3.2  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   7.4  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   9.7  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 634 YTREQRLPFTATVPGL*NM*VPNTHYSKRSSELTF 530
           Y+    LP T T+ G   + +P T Y+ +S  L +
Sbjct: 130 YSNTNSLPITDTINGTTELIIPTTSYNNQSHTLIY 164


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 404 PKSSICSLVYVCDSWYNRIKY 466
           P   IC++VYVC+  + R +Y
Sbjct: 117 PAGKICNVVYVCERKFIRKEY 137


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 57  CIEVI-TYQRFHKKKPSGSWLELKRIHLHCNC 149
           C+ V  T+Q+ H      + L  K++ L C C
Sbjct: 141 CLSVASTFQKLHNMYMGSTHLNFKKLVLECEC 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,163
Number of Sequences: 5004
Number of extensions: 45456
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)