Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0304.Seq
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)                      29   4.5  
SB_7254| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  

>SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)
          Length = 761

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 434 RKLVNIYSTWART*ALLGLGEYFSRVPSNLVA 339
           R+L+N+YS  A   A++GL +YF  V S L A
Sbjct: 471 RRLMNLYSKKALILAVMGLEKYFRFVHSTLQA 502


>SB_7254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 627 ENSGYLSPRPFQVCE-ICRYQTHIILNE 547
           EN+ Y    PF+VC  IC +Q  +++ E
Sbjct: 137 ENTAYPDTLPFKVCRIICEFQYRLLIQE 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,420,803
Number of Sequences: 59808
Number of extensions: 313000
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)