Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0303.Seq
         (675 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ZPI9 Cluster: MKIAA1740 protein; n=6; Amniota|Rep: MK...    36   1.2  
UniRef50_Q9YW81 Cluster: ORF MSV011 leucine rich repeat gene fam...    34   2.7  
UniRef50_A1DCV0 Cluster: Acyl-CoA oxidase; n=6; Pezizomycotina|R...    34   3.6  

>UniRef50_Q6ZPI9 Cluster: MKIAA1740 protein; n=6; Amniota|Rep:
           MKIAA1740 protein - Mus musculus (Mouse)
          Length = 978

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -2

Query: 302 SGRKAAACKSAAERVSPRPTPGAPPRSRGALAAKR 198
           SG     CKSA  R+ P PTP   PR RG   A R
Sbjct: 351 SGYMQPPCKSAGHRLQPPPTPAPSPRFRGPSQALR 385


>UniRef50_Q9YW81 Cluster: ORF MSV011 leucine rich repeat gene family
           protein, similar to Amsacta moorei entomopoxvirus Q3 ORF
           SW:P28854; n=3; Melanoplus sanguinipes
           entomopoxvirus|Rep: ORF MSV011 leucine rich repeat gene
           family protein, similar to Amsacta moorei entomopoxvirus
           Q3 ORF SW:P28854 - Melanoplus sanguinipes entomopoxvirus
           (MsEPV)
          Length = 505

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 470 SDSKYLP*AGNFKIYLVN-NKAAQFNLSSRPNYIN*PFCKF*NIKNFQFINRIY 312
           SD K+L    N +I  ++ NK +       PN +    CK+ NIKNF+FI R++
Sbjct: 200 SDIKFLEHLSNLEILNISYNKISYIYNYKLPNNLIELNCKYNNIKNFKFIERLH 253


>UniRef50_A1DCV0 Cluster: Acyl-CoA oxidase; n=6; Pezizomycotina|Rep:
           Acyl-CoA oxidase - Neosartorya fischeri (strain ATCC
           1020 / DSM 3700 / NRRL 181)(Aspergillus fischerianus
           (strain ATCC 1020 / DSM 3700 / NRRL 181))
          Length = 692

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 175 LYKQTKNRRLAASAPRD-RGGAPGVGRGLTRSAADLHAAA 291
           LY++ +N+R AA A +D RG AP   R  +   ADLHA +
Sbjct: 369 LYEENQNKRAAAEAEQDKRGAAPEALRAGSDLLADLHATS 408


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,429,716
Number of Sequences: 1657284
Number of extensions: 12129001
Number of successful extensions: 40058
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40014
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)