Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0303.Seq
         (675 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.3  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   4.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   5.3  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 291 SRGMQVRGGAGQPTADAGG 235
           S G+   G A  PTA AGG
Sbjct: 253 SFGLHATGSAPSPTAGAGG 271


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 10  SPRPFRQTDIMSQSHTGAFPTRYKRAPGAA 99
           S RPF +  + + + +  +PTR    P  A
Sbjct: 361 SLRPFSRWSLCNSARSNKYPTRVPHRPYVA 390


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 436 KLPA*GKYFESDAGNTADILNFY 504
           KLP  G + E+ AGN A + N Y
Sbjct: 19  KLPFSGLFIENQAGN-APVFNNY 40


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,870
Number of Sequences: 336
Number of extensions: 3140
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)