Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0303.Seq
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    25   10.0 
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    25   10.0 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   10.0 

>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 81  FVASRERAGVALRHDVRLPEGP 16
           F+     +G  ++H+ RLP+GP
Sbjct: 150 FLMGSPNSGFVVKHEKRLPDGP 171


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 594 CKIFVSAKKLLVSLPYSKVTFIKTTFCHLLIKV 496
           C  F+  +  L+++ Y K  +IK   C +L+K+
Sbjct: 57  CTFFMIEEWHLLAILYDKSKYIKIIICSVLLKL 89


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 211 WPLNVYFLFVCIKLYMATQCFKLAT 137
           +PL  + LF C  L++++  F LA+
Sbjct: 189 FPLLSFILFPCFSLFLSSNSFSLAS 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,435
Number of Sequences: 5004
Number of extensions: 47491
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)