Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0303.Seq
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615...    31   0.84 
03_02_0137 + 5832608-5833590,5833680-5833731,5833827-5833904,583...    30   1.5  
09_04_0369 - 17009308-17009501,17009528-17009714,17009802-170101...    29   4.5  
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847...    28   5.9  
01_06_0489 + 29754298-29754549,29754639-29754772,29755667-297557...    28   5.9  
08_01_1081 + 11058119-11059756                                         28   7.8  
07_03_0487 - 18663890-18663964,18664286-18664441,18664693-186652...    28   7.8  
04_04_0950 + 29609484-29611025                                         28   7.8  

>07_03_1779 -
           29458889-29459249,29461107-29461283,29461374-29461573,
           29461673-29462752
          Length = 605

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 20/45 (44%), Positives = 24/45 (53%)
 Frame = -2

Query: 287 AACKSAAERVSPRPTPGAPPRSRGALAAKRLFFVCLYKAVHGNTM 153
           AA   AA++ SPR TPG P    GAL +  +    LY   HGN M
Sbjct: 109 AAAPVAAKQPSPRRTPG-PLSFAGALLSLLVVATFLYINDHGNMM 152


>03_02_0137 +
           5832608-5833590,5833680-5833731,5833827-5833904,
           5835228-5835347,5835618-5835716,5835821-5835975,
           5836117-5836257,5836395-5836503
          Length = 578

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 308 TDSGRKAAACKSAAERVSPRPTPGAPPRSRGALAAKR 198
           T + + A+A  SA +++S  P P  PPR R  L AK+
Sbjct: 102 TTASKSASASASARKKIST-PAPPPPPRERRFLVAKK 137


>09_04_0369 -
           17009308-17009501,17009528-17009714,17009802-17010167,
           17010341-17010450,17012422-17012656
          Length = 363

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 312 LDRQWAKSRGMQVRGGAGQPTADAGGSTSVPGCTGR*TSIFCLFV 178
           +D +   + G+++ GG G      GG  +V G  GR  S  C+FV
Sbjct: 5   VDVELGGAAGLEIAGGGG---GGGGGVWAVAGAIGRAASFRCVFV 46


>02_05_0884 -
           32483735-32483866,32484417-32484491,32484707-32484780,
           32485180-32485291,32485476-32485548,32485674-32485729,
           32486046-32486122,32486799-32486940
          Length = 246

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 156 NASSWQHLVGVTIVGLCHD 100
           N +S +H +G TIVG+C+D
Sbjct: 16  NPTSGEHRMGTTIVGVCYD 34


>01_06_0489 +
           29754298-29754549,29754639-29754772,29755667-29755721,
           29755888-29756007,29756048-29756140,29756360-29756474,
           29756728-29757077,29757264-29757332,29757902-29758509,
           29758577-29758646
          Length = 621

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 9   LAQALQANGHHVAKPHRRVPDSLQTRTR--SGGHDTVPL 119
           L+  LQ     +A+PH+ VPD   +RT+  SG ++  P+
Sbjct: 262 LSNVLQKPEGPIAEPHKTVPDDKGSRTKHISGFYEEYPI 300


>08_01_1081 + 11058119-11059756
          Length = 545

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 299 GRKAAACKSAAERVSPRPTPGAPPRSRGAL 210
           G +AAA  +A  R+ P P P  PP   G L
Sbjct: 196 GIRAAAAAAAMPRLLPPPPPPPPPAMNGQL 225


>07_03_0487 -
           18663890-18663964,18664286-18664441,18664693-18665295,
           18665566-18665894,18665992-18666504,18667128-18667242,
           18667326-18667397,18667480-18667644,18668604-18668752,
           18668830-18668899,18668975-18669121,18669199-18669267,
           18669366-18669416,18669537-18669629,18670122-18670211
          Length = 898

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 330 VHKSYLLDRQWAKSRGMQVR-GGAGQPTADAGGSTSVPGCTGR*TS 196
           V     +  Q   S+G Q   GG  QP A  GG  S+P    + T+
Sbjct: 396 VRSQVAMPNQSTVSQGSQTAVGGGSQPQASVGGVASIPSIVAQVTA 441


>04_04_0950 + 29609484-29611025
          Length = 513

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 7   PSPRPFRQTDIMSQSHTGAFPTRYKRAPGAAVMTQSHYGN 126
           PSP P+    + S S+T +FP +  R         S YGN
Sbjct: 82  PSPVPYMTARVFSSSYTYSFPVKPGRVFLRLYFYPSAYGN 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,214,962
Number of Sequences: 37544
Number of extensions: 361238
Number of successful extensions: 1409
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)