Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0303.Seq
         (675 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    25   2.2  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   6.7  
AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dp...    23   6.7  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    23   8.8  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   8.8  

>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 276  VRGGAGQPTADAGGSTSVPGCTG 208
            V GGAG     AGGST+ PG  G
Sbjct: 3197 VAGGAGLAMVGAGGSTA-PGAGG 3218


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 305  DSGRKAAACKSAAER-VSPRPTPGAPPRSRGALAAKR 198
            ++ R+AA  +   ER     PTP A PR+    AA R
Sbjct: 1112 NANRRAATARRREERRAGLPPTPPASPRTAQRRAALR 1148


>AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dpp
           protein.
          Length = 474

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 288 GFSP-TVCLINTIYELKIFNILKFTKWL 368
           GF P TVC I     LKIFN  +F + L
Sbjct: 374 GFHPSTVCKIPPGCSLKIFNNQEFAQLL 401


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 308 TDSGRKAAACKSAAERVSPRPTPGAPP 228
           +D     A   S++ +++PRPTP   P
Sbjct: 168 SDMSSPGAPTGSSSPQITPRPTPVKSP 194


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 275  SAAERVSPRPTPGAPPRSRGALAAKR 198
            S  +R    PTP  PPR+ G  A  R
Sbjct: 1117 SEEQRGRRHPTPSPPPRAVGRRAEVR 1142


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,332
Number of Sequences: 2352
Number of extensions: 14369
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67741110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)