Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0303.Seq
         (675 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3399|AAF51628.1| 1088|Drosophila melanogaster CG13251-P...    29   7.7  

>AE014296-3399|AAF51628.1| 1088|Drosophila melanogaster CG13251-PA
           protein.
          Length = 1088

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 270 GGAGQPTADAGGSTSVPGCTGR*TS 196
           GGAG P    GG+   PGC    TS
Sbjct: 233 GGAGNPPGGGGGAPGPPGCQEEDTS 257


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,400,304
Number of Sequences: 53049
Number of extensions: 589011
Number of successful extensions: 1846
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1842
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)