Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0303.Seq
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-21|CAC14418.2|  617|Caenorhabditis elegans Hypothetical...    29   3.0  
AL132863-12|CAC15862.2|  617|Caenorhabditis elegans Hypothetical...    29   3.0  
AF160189-1|AAD45355.1|  617|Caenorhabditis elegans putative seri...    29   3.0  
U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical pr...    28   5.3  

>AL132898-21|CAC14418.2|  617|Caenorhabditis elegans Hypothetical
           protein Y59A8B.14 protein.
          Length = 617

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 302 SGRKAAACKSAAERVSPRPT--PGAPPRSRGALAAKRLFFVCLYKA 171
           +    A     A    P PT  PGAPPR R     KR FF C++++
Sbjct: 572 TAENGAETDGVASASDPPPTAAPGAPPRRR-----KRNFFSCIFRS 612


>AL132863-12|CAC15862.2|  617|Caenorhabditis elegans Hypothetical
           protein Y59A8B.14 protein.
          Length = 617

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 302 SGRKAAACKSAAERVSPRPT--PGAPPRSRGALAAKRLFFVCLYKA 171
           +    A     A    P PT  PGAPPR R     KR FF C++++
Sbjct: 572 TAENGAETDGVASASDPPPTAAPGAPPRRR-----KRNFFSCIFRS 612


>AF160189-1|AAD45355.1|  617|Caenorhabditis elegans putative
           serine-threonine kinasePAR-4 protein.
          Length = 617

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 302 SGRKAAACKSAAERVSPRPT--PGAPPRSRGALAAKRLFFVCLYKA 171
           +    A     A    P PT  PGAPPR R     KR FF C++++
Sbjct: 572 TAENGAETDGVASASDPPPTAAPGAPPRRR-----KRNFFSCIFRS 612


>U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical
           protein F53B1.2 protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 585 FVSAKKLLVSLPYSKVTFIKTTFCHLLI 502
           F S  KLL++  YS ++F+ T+F  +L+
Sbjct: 175 FKSVAKLLIAFAYSSLSFLMTSFVMVLV 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,209
Number of Sequences: 27780
Number of extensions: 285472
Number of successful extensions: 747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)