Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0303.Seq
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03730.1 68414.m00353 expressed protein similar to ESTs gb|AA...    31   0.70 
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    29   2.8  
At5g02130.1 68418.m00134 expressed protein kinesin light chain -...    28   6.6  

>At1g03730.1 68414.m00353 expressed protein similar to ESTs
           gb|AA605440 and gb|H37232
          Length = 167

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = -2

Query: 257 SPRPTPGAPPRSR---GALAAKRLFFVCLYKAVHGNTMLQAGN-I*SVLP*WDCVMTAAP 90
           SPR + G+PPRS      + +KR  +VCL+ AV+   +  + N + SVL  +    T++P
Sbjct: 7   SPRTSNGSPPRSYLIFMRIMSKRRTWVCLFVAVYAILLASSWNFLTSVLSWYKLQYTSSP 66


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 28  QTDIMSQSHTGAFPTRYKRAPGAAVMTQSHYGNTD 132
           +TD++ ++  G+   R K     A MT++ YGN D
Sbjct: 250 KTDLVGEAELGSVVQRIKTINSMAQMTRTKYGNVD 284


>At5g02130.1 68418.m00134 expressed protein kinesin light chain -
           Plectonema boryanum, EMBL:U78597
          Length = 420

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/81 (28%), Positives = 33/81 (40%)
 Frame = +1

Query: 46  QSHTGAFPTRYKRAPGAAVMTQSHYGNTD*MLPA*SIVLPCTALYKQTKNRRLAASAPRD 225
           +SH G F    K    A   T+ HYG+     P   ++L   AL    K       A ++
Sbjct: 270 ESHIGNFGVAEKTLTDALTKTEEHYGDNH---PKVGVILTAVALMYGNK-------AKQE 319

Query: 226 RGGAPGVGRGLTRSAADLHAA 288
           R  +  +  GL R A +L  A
Sbjct: 320 RSSSILIQEGLYRKALELMKA 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,317,052
Number of Sequences: 28952
Number of extensions: 257654
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)