Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0300X.Seq
         (404 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5FL29 Cluster: Putative uncharacterized protein; n=1; ...    32   5.0  
UniRef50_Q23JH8 Cluster: NLI interacting factor-like phosphatase...    32   5.0  
UniRef50_Q9EMW6 Cluster: AMV083; n=1; Amsacta moorei entomopoxvi...    31   8.7  

>UniRef50_A5FL29 Cluster: Putative uncharacterized protein; n=1;
           Flavobacterium johnsoniae UW101|Rep: Putative
           uncharacterized protein - Flavobacterium johnsoniae
           UW101
          Length = 130

 Score = 31.9 bits (69), Expect = 5.0
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 28  FCEMICFLQ*CFGWRLQXAGEPFH*LIELLFLLVAKTLLIILYTNITHIKKDHFN-MSNI 204
           F   +C L     + L+   E FH  IELL+L+   T  ++LY  +  +KK +F  +  +
Sbjct: 15  FTAAVCILHKAAFYFLEIKTENFHYSIELLYLIFFGT-AVLLYLILLVVKKKNFQIVGMV 73

Query: 205 CIV*TLTTGLLA 240
            +  T T  LLA
Sbjct: 74  FLFGTFTQMLLA 85


>UniRef50_Q23JH8 Cluster: NLI interacting factor-like phosphatase
            family protein; n=1; Tetrahymena thermophila SB210|Rep:
            NLI interacting factor-like phosphatase family protein -
            Tetrahymena thermophila SB210
          Length = 1190

 Score = 31.9 bits (69), Expect = 5.0
 Identities = 15/74 (20%), Positives = 37/74 (50%)
 Frame = +1

Query: 103  LIELLFLLVAKTLLIILYTNITHIKKDHFNMSNICIV*TLTTGLLACIQITMRSIEIRLW 282
            L++   +L   T+ +I+Y  +   KKDHFN + + ++ T++   +  + +    I+ +  
Sbjct: 851  LVKKCLILERLTINLIIYLTLDGAKKDHFNYNVVNLMETISQNYIIILNLLCNQIKTQGI 910

Query: 283  SKAQMYCTMNKTIE 324
             + +    M + I+
Sbjct: 911  PQNEWIAKMEEVIQ 924


>UniRef50_Q9EMW6 Cluster: AMV083; n=1; Amsacta moorei entomopoxvirus
           'L'|Rep: AMV083 - Amsacta moorei entomopoxvirus (AmEPV)
          Length = 134

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
 Frame = +1

Query: 310 NKTIEYNKKKTI-----YC*STNNLRLIYNN 387
           N  I YNK + I     YC + NNLR+IYNN
Sbjct: 78  NYNIYYNKIRNILDSKLYCDNNNNLRIIYNN 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 311,444,771
Number of Sequences: 1657284
Number of extensions: 5062212
Number of successful extensions: 10554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10551
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)