Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0300X.Seq
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    25   4.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   5.9  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   5.9  

>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 207 YRLNINYWIVGLYSNYNAFDRDPAV 281
           Y  N +Y  +G+  N+NAF+ D  V
Sbjct: 111 YHQNKSYLKMGVTDNFNAFEEDSRV 135


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 67   WRLQXAGEPFH*LIELLFLLVAKTLLIILYTNITHIKKDHFNMSN 201
            WR     E    ++  LFL   KTL+    T I  I +D+    N
Sbjct: 1183 WRAAGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKN 1227


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 59  VLVGDCKXPESRFISLLNCFFSWWLKHS 142
           +L  D    +S F S ++CFFS W + +
Sbjct: 141 LLAYDFALRKSAFSSSVSCFFSLWFRQT 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,381,376
Number of Sequences: 5004
Number of extensions: 23493
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)