Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0300X.Seq
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19)           30   0.82 
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   1.1  
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   1.1  
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    27   4.4  
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19)
          Length = 426

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -3

Query: 378 YQSQIICTLTINSFF-FIIFNCLIHCAVHLS 289
           Y + I  TLT+NS + F+ F+CL+ C +H++
Sbjct: 375 YNAYIYATLTLNSVYDFLDFSCLV-CCMHVA 404


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 402 VITRLIVIYQSQIICTLTINSFFFIIFNCLIHCAVHLSF 286
           +IT   +I  ++ +CTL    FFF   NC ++  V+L F
Sbjct: 282 IITESRLISSARALCTLYYLRFFFSHVNCCLNPLVYLLF 320


>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1125

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 402  VITRLIVIYQSQIICTLTINSFFFIIFNCLIHCAVHLSF 286
            +IT   +I  ++ +CTL    FFF   NC ++  V+L F
Sbjct: 1025 IITESRLISSARALCTLYYLRFFFSHVNCCLNPLVYLLF 1063


>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 280 WSKAQMYCTMNKTIEYNKKKTIYC*STNNLRLIYNNKSSYN 402
           WS    + T N    YN   T +  ST N    +NN S+YN
Sbjct: 64  WSTYNNWSTYNNWSTYNNWSTYHNWSTYNNWSTHNNWSTYN 104


>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 280 WSKAQMYCTMNKTIEYNKKKTIYC*STNNLRLIYNNKSSYN 402
           WS    + T N    YN   T    ST+N    YNN S++N
Sbjct: 36  WSTYNNWSTHNNWSTYNNWSTYNNWSTHNNWSTYNNWSTHN 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,588,693
Number of Sequences: 59808
Number of extensions: 151890
Number of successful extensions: 348
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)