Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0300X.Seq
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY255667-1|AAQ96604.1|  159|Caenorhabditis elegans MiRP4 protein.      29   1.7  
AY255666-1|AAQ96603.1|  164|Caenorhabditis elegans MPS-3 protein.      29   1.7  
AF099925-6|AAC69501.1|  159|Caenorhabditis elegans Mirp k channe...    29   1.7  
AF099925-5|AAZ94292.1|  164|Caenorhabditis elegans Mirp k channe...    29   1.7  
Z92972-4|CAB07489.2|  337|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AF045643-2|AAC02596.2|  663|Caenorhabditis elegans Hypothetical ...    27   3.9  
AF099925-7|AAO38626.1|  115|Caenorhabditis elegans Mirp k channe...    26   9.0  

>AY255667-1|AAQ96604.1|  159|Caenorhabditis elegans MiRP4 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -1

Query: 317 VLFIVQYI*ALLHXXXXXXXXXXXIQANNPVVNVQTIQILLMLK*SFLI*VILVYNIIRS 138
           VL  +  + +L+H            +A+NPV+    I  L+++   FLI +IL+++I +S
Sbjct: 30  VLLSLHSLSSLIHVAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLIILILIFSIFKS 89


>AY255666-1|AAQ96603.1|  164|Caenorhabditis elegans MPS-3 protein.
          Length = 164

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -1

Query: 317 VLFIVQYI*ALLHXXXXXXXXXXXIQANNPVVNVQTIQILLMLK*SFLI*VILVYNIIRS 138
           VL  +  + +L+H            +A+NPV+    I  L+++   FLI +IL+++I +S
Sbjct: 35  VLLSLHSLSSLIHVAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLIILILIFSIFKS 94


>AF099925-6|AAC69501.1|  159|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 2, isoform a protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -1

Query: 317 VLFIVQYI*ALLHXXXXXXXXXXXIQANNPVVNVQTIQILLMLK*SFLI*VILVYNIIRS 138
           VL  +  + +L+H            +A+NPV+    I  L+++   FLI +IL+++I +S
Sbjct: 30  VLLSLHSLSSLIHVAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLIILILIFSIFKS 89


>AF099925-5|AAZ94292.1|  164|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 2, isoform d protein.
          Length = 164

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -1

Query: 317 VLFIVQYI*ALLHXXXXXXXXXXXIQANNPVVNVQTIQILLMLK*SFLI*VILVYNIIRS 138
           VL  +  + +L+H            +A+NPV+    I  L+++   FLI +IL+++I +S
Sbjct: 35  VLLSLHSLSSLIHVAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLIILILIFSIFKS 94


>Z92972-4|CAB07489.2|  337|Caenorhabditis elegans Hypothetical
           protein T19C9.4 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 115 LFLLVAKTLLIILYTNITHIKKDHFNMSNICIV*TLTTGLLACIQITM 258
           LF+++A  + ++L +     +++  N+SN+CI    T GL   I I +
Sbjct: 265 LFVIIAPAMAVLLASWTGTYRQEWMNLSNVCIA---THGLAESISIML 309


>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 73  LQXAGEPFH*LIELLFLLVAKTLLIILYTNITHIKKDHF----NMSNICIV*TLTTGLLA 240
           L  A +PF  ++      +    L++L T++ H   DH      +++ C+   L  GL+ 
Sbjct: 182 LLAAEQPFLTILSSFGYSLTSQCLVLLLTSLFHSSHDHLFFFVLLASFCVPSALRMGLIV 241

Query: 241 CIQ 249
           C Q
Sbjct: 242 CNQ 244


>AF045643-2|AAC02596.2|  663|Caenorhabditis elegans Hypothetical
           protein F58H7.7 protein.
          Length = 663

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 201 YLYRLNINYWIVGLYSNYNAFDRDPAVE*SSNVL 302
           +L    +NY  + LY++YN  D DP VE S+ VL
Sbjct: 601 HLTSFPLNY--ISLYNSYNLRDEDPVVE-STGVL 631


>AF099925-7|AAO38626.1|  115|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 2, isoform c protein.
          Length = 115

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = -1

Query: 242 QANNPVVNVQTIQILLMLK*SFLI*VILVYNIIRS 138
           +A+NPV+    I  L+++   FLI +IL+++I +S
Sbjct: 11  KADNPVLTHFQIFCLVIIGIGFLIILILIFSIFKS 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,517,688
Number of Sequences: 27780
Number of extensions: 128726
Number of successful extensions: 271
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)