Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0300X.Seq
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.33 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.3  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 313 KTIEYNKKKTIYC*STNNLRLIYNNKSSYN 402
           K I     KTI+  + NN +  YNNK +YN
Sbjct: 80  KIISSLSNKTIH--NNNNYKYNYNNKYNYN 107


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 281  GVKLKCTAQ*IRQLNIIKKKLFIVKVQII 367
            G+KL  TA    QLN   K++   + Q++
Sbjct: 1137 GLKLATTASHANQLNRQGKQVIQTQYQVV 1165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,342
Number of Sequences: 438
Number of extensions: 1749
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)