Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0300X.Seq
         (404 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family ...    27   4.8  
At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family ...    27   4.8  

>At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family
           protein similar to SP|Q9Y2Y1 DNA-directed RNA
           polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) (RNA
           polymerase III C11 subunit) {Homo sapiens}; contains
           Pfam profiles PF02150: RNA polymerases M/15 Kd subunit,
           PF01096: Transcription factor S-II (TFIIS)
          Length = 106

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 47  FYNNVLVGDCKXPESRFISLLNCFFSW 127
           ++ ++ +     PESRF   L C F+W
Sbjct: 77  YFKSMQIRSADEPESRFYRCLKCEFTW 103


>At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family
           protein similar to SP|O13896 DNA-directed RNA
           polymerases III 12.5 kDa polypeptide (EC 2.7.7.6)
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF02150: RNA polymerases M/15 Kd subunit, PF01096:
           Transcription factor S-II (TFIIS)
          Length = 106

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 47  FYNNVLVGDCKXPESRFISLLNCFFSW 127
           ++ ++ +     PESRF   L C F+W
Sbjct: 77  YFKSMQIRSADEPESRFYRCLKCEFTW 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,756,262
Number of Sequences: 28952
Number of extensions: 109341
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)