Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0299.Seq
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       27   0.12 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.0  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   2.6  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   6.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 426 SC-DCLQGFQLTHFPRWRHRVRYGHPPHLKIREE---YPDRIMNTYSVVPSPKV 575
           SC DC    +  H  +  H  RYGH P++ + EE    PD I++ +     PK+
Sbjct: 288 SCRDCSYATKYCHSLKI-HLRRYGHTPNVVLDEEGNPCPDIIIDVHGTRRGPKI 340


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 91   NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 213
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 390 DSVLDVVRKESESCDCLQGFQLTHFPRWRHRVRY 491
           D V    RK +E C  LQGF     P+ +  +R+
Sbjct: 233 DVVASNSRKTAEMCYKLQGFYPEEAPQRKELLRF 266


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = +3

Query: 411 RKESESCDCLQGFQLTHFPRWRHRVRYGHPPHLKIREEY 527
           +K+ E    +    + H P W H +     PH +I+ ++
Sbjct: 75  QKQKEDVHKVFQHLMIHRPNWWHELETKFNPHHEIKLQH 113


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 449 PTYTFPSVAAPGPVWAPSSSK 511
           P Y FP+   P P+ +P  S+
Sbjct: 163 PMYPFPAGQYPYPILSPEMSQ 183


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 449 PTYTFPSVAAPGPVWAPSSSK 511
           P Y FP+   P P+ +P  S+
Sbjct: 55  PMYPFPAGQYPYPILSPEMSQ 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,469
Number of Sequences: 336
Number of extensions: 4056
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)