Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0299.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    29   0.035
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.0  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 29.5 bits (63), Expect = 0.035
 Identities = 22/88 (25%), Positives = 39/88 (44%)
 Frame = +3

Query: 387 VDSVLDVVRKESESCDCLQGFQLTHFPRWRHRVRYGHPPHLKIREEYPDRIMNTYSVVPS 566
           +DS+++++R   ++CD L G   T            H P + I +   D+I+  Y +  S
Sbjct: 106 IDSIINIIRVRVDACDRLWGVD-TGVDDILGNNTVIHQPRIIIIDLKTDKILRIYPLKSS 164

Query: 567 PKVSDTVVEPYNATLSVHQLVENTDETY 650
            + SD+    +   L +     N D TY
Sbjct: 165 DQTSDS----FFVDLVIDVDPNNCDNTY 188


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 633 FQLAGELRESHCM 595
           F   G +RESHCM
Sbjct: 68  FGCCGAIRESHCM 80


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 190 CAPTASQSPHGRHRWGRCRARQ 125
           C+P   Q+P  R   GR R R+
Sbjct: 392 CSPPPRQTPPSRKESGRRRRRR 413


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 411 GLHRGPSQRAQHPLCSVPWPSCCQRRTVRRRSCPDGRSVRKVQSGQSPWCRAQVD 247
           G+H    Q+AQ     V  P   Q++     + P G +   + S   PW R+Q +
Sbjct: 220 GMHPRQQQQAQQHQGVVTSPLSQQQQ-----AAPQGAASANLPSPLYPWMRSQFE 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,546
Number of Sequences: 438
Number of extensions: 4674
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)