Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0298X.Seq
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    26   3.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   4.9  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   4.9  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    25   6.5  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   6.5  
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit...    25   8.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.5  

>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 119 HAQVPPQYRTVMPPHALLNSASSGNVPH 202
           H+ +PP    V PPH +L +ASS  + H
Sbjct: 249 HSSLPP----VPPPHLILPTASSSQIFH 272


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -3

Query: 373 LRVHPLTLRTLTFSILV*MIVDGCSSHYHSSATTAEISSSRNDSLRLQLEVHAW 212
           L   P +  T   S+L    +DG +S   +S     +SSS   SL  +     W
Sbjct: 417 LLASPTSSSTFVTSLLRRSSIDGSASSSSASLAVPTVSSSTTGSLHYKTTTTVW 470


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 116 LHAQVPPQYRTVMPPHALLNSASSGNVP 199
           L A +PP +R  +PP   L  AS G +P
Sbjct: 138 LRANIPPVHRKHLPPRLSL-VASPGTIP 164


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 265 SPPSSLTNGNGKSIRPQSFTP 327
           SPPS+LTN + + ++P +  P
Sbjct: 273 SPPSALTNPSTEELKPSTSLP 293


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 294 WEEHPSTIIYTRIEKVKVLNVSG 362
           WE++   ++  R+E++KV+  SG
Sbjct: 162 WEDYQKLLLLQRLEQMKVIKDSG 184


>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
           subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +2

Query: 116 LHAQVPPQYRTVMPPHALLNSASSGNVPHAQGPRVHFKLQPQT 244
           L  Q PP    ++PP  +L +    ++ HA+       L  +T
Sbjct: 69  LPVQGPPTEELIIPPEEMLETKEEESLKHAREENDDLHLDKET 111


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 265 SPPSSLTNGNGKSIRPQSFTPGLK 336
           SP SS  +   KSI+PQ   P LK
Sbjct: 895 SPSSSSKSDAAKSIKPQKPEPALK 918


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,349
Number of Sequences: 5004
Number of extensions: 35747
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)