Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0298X.Seq
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567... 38 0.006
03_05_0403 - 23855059-23855075,23855134-23855162,23855318-238553... 31 0.69
02_03_0279 + 17250347-17252098 28 0.91
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 29 2.1
06_01_1086 + 8890806-8890865,8890970-8891055,8891366-8891440,889... 29 2.1
07_03_0589 + 19773904-19774032,19774224-19774298,19774947-197754... 28 3.7
01_06_1096 + 34502668-34503036,34504294-34505317,34505388-34505656 28 3.7
03_06_0607 + 35037467-35038624 27 6.5
10_08_0116 + 14935582-14936089,14936850-14937188,14937914-149379... 27 8.6
03_01_0142 + 1133064-1133999 27 8.6
>12_01_0667 +
5674322-5674393,5674455-5675159,5676051-5676087,
5676238-5676335,5676452-5676475
Length = 311
Score = 37.5 bits (83), Expect = 0.006
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 5 NVHAKEF--TMAKPIDLHNRXALGVGYASVGLQHSRSAVLHAQVPPQYRTVMPPHALLNS 178
N H KE A P+ H+ LGVG G H +L A +PP R VMP A+ S
Sbjct: 135 NFHRKELDAAAAPPLHHHHHQLLGVGAHPRGHGHHHHHLLVAALPPPTRMVMPLSAMHTS 194
Query: 179 AS 184
S
Sbjct: 195 ES 196
>03_05_0403 -
23855059-23855075,23855134-23855162,23855318-23855375,
23855667-23856123
Length = 186
Score = 30.7 bits (66), Expect = 0.69
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 80 ASVGLQHSRSAVLHAQVPPQYRTVMPPHALLNSASSGNVPHAQGPRVHFKLQ 235
++VGL S + + +PP +RT+ PP L++ PH + PR +L+
Sbjct: 12 SAVGLHLSGPRCIPS-LPPAFRTISPPPGLIDYLPPAASPHIRLPRQQQRLR 62
>02_03_0279 + 17250347-17252098
Length = 583
Score = 28.3 bits (60), Expect(2) = 0.91
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -3
Query: 196 HVPAGG---AIEERVRRHHGSVLGRHLRVQHRRPGVLQSHTSVPHAQ 65
H PAGG A+ RRHH SV + + P + Q+H Q
Sbjct: 26 HSPAGGGGAAVPLHPRRHHRSVANTATALFYPAPSMHQNHIEAEEGQ 72
Score = 20.6 bits (41), Expect(2) = 0.91
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 358 LTLRTLTFSILV*MIVDGCSSHYHSSA 278
L R +LV +I +SH+HS A
Sbjct: 3 LLFRISLLLLLVPLIPTAAASHHHSPA 29
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +2
Query: 119 HAQVPPQYR---TVMPPHALLNSASSGNVPHAQGP 214
H Q PPQ+R +V+ P+A ++A+ GN P P
Sbjct: 770 HHQQPPQHRHQQSVVRPNAAASAAAGGNPPGTAAP 804
>06_01_1086 +
8890806-8890865,8890970-8891055,8891366-8891440,
8892780-8892921,8893304-8893490,8893944-8894425,
8894595-8894975,8895056-8895100,8896486-8896639,
8897750-8897895,8898016-8898099
Length = 613
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 298 KSIRPQSFTPGLKRSKSLTSADALAS 375
K + Q F PG K ++ LTSADAL S
Sbjct: 283 KLLFQQQFKPGEKNAQDLTSADALES 308
>07_03_0589 +
19773904-19774032,19774224-19774298,19774947-19775444,
19775898-19776263,19776636-19776727,19776826-19776872,
19776953-19777014,19778461-19778498,19779354-19779366
Length = 439
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 223 LQAATADYHSWKKKSPPSSLTNGNGK 300
L+ DY +WKK++ NGNGK
Sbjct: 13 LRFKAPDYATWKKEAAACDKANGNGK 38
>01_06_1096 + 34502668-34503036,34504294-34505317,34505388-34505656
Length = 553
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 205 TGATRALQAATADYHSWKKKSPPSSLTNGNGKSIRPQSFTPG 330
T +T + AA+ D K SP S + G+G+ + + PG
Sbjct: 443 TESTPPVSAASPDIFQLSKVSPAQSTSMGSGEQVMGPKYEPG 484
>03_06_0607 + 35037467-35038624
Length = 385
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 83 SVGLQHSRSAVLHAQVP--PQYRTVMPPHALLNSASSGNVPHAQGPRV 220
S G SR L A V + +PP + A+SG +PHA G V
Sbjct: 288 SCGTSFSRKDKLFAHVAIFDGHSPALPPEDYDDDAASGQLPHAAGEAV 335
>10_08_0116 +
14935582-14936089,14936850-14937188,14937914-14937960,
14938175-14938264
Length = 327
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 243 VCGCSLKCTRGPCACG 196
V GCSL T PC+CG
Sbjct: 253 VMGCSLVSTARPCSCG 268
>03_01_0142 + 1133064-1133999
Length = 311
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 44 DLHNRXALGVGYASVGLQHSRSAVLHAQVPPQ 139
D H R A VGY + SR + + +PPQ
Sbjct: 199 DHHRRHAHAVGYDAYAAATSRQVLFYRPLPPQ 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,743,794
Number of Sequences: 37544
Number of extensions: 302452
Number of successful extensions: 945
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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