Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0298X.Seq
(504 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13499| Best HMM Match : PP2C (HMM E-Value=1.8e-06) 30 0.94
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28) 29 2.9
SB_22638| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_3970| Best HMM Match : Drf_FH1 (HMM E-Value=1.2) 29 2.9
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13) 29 2.9
SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7) 29 2.9
SB_55281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0) 28 5.0
SB_53644| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_36430| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_6184| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_39282| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_32949| Best HMM Match : SAP (HMM E-Value=1) 27 6.6
SB_10296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_13499| Best HMM Match : PP2C (HMM E-Value=1.8e-06)
Length = 177
Score = 30.3 bits (65), Expect = 0.94
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 195 CHMHRGHACTSSCNRRLSFLEEEISAVVADEW*WEEHPSTIIYTRIEKVKVLNVSGCTRK 374
CH HRG S+ R+ FL +S + D W ++ + + + VKV ++ T K
Sbjct: 93 CHGHRGPMRRSTKTERVPFL--AVSRSLGDLWSFDYFRGEFVVSPVPDVKVYTINPATDK 150
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 247 HSWKKKSPPSSLTNGNGKSIRPQSFTPGLK-RSKSLTSAD 363
HS + ++PP S + S P+S TP ++ R KSL +D
Sbjct: 1846 HSLRARTPPPSFQKASHSSGTPRSQTPPVRWRRKSLNDSD 1885
>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
Length = 434
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 159 LTRSSIAPPAGTCHMHRGHACTSSCNRRLSFLEEEISAVVADEW 290
L +S++ P CH+ H C +S +R+L L+E V +W
Sbjct: 352 LYKSAVLPYLTYCHL-TWHFCKASDSRKLERLQERALRAVFKDW 394
>SB_22638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 119 HAQVPPQYRTVMPPHALLNSASSGNVP 199
+ ++PPQ +T P H N A GNVP
Sbjct: 313 YTEIPPQLKTRSPIHGFANGA-QGNVP 338
>SB_3970| Best HMM Match : Drf_FH1 (HMM E-Value=1.2)
Length = 558
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 268 PPSSLTNGNGKSIRPQSFTPGLKRSKSLTSADALASCM 381
PP + + + K I P +FT G R +S+TS+ S +
Sbjct: 154 PPDTPGSSHHKLITPDAFTKGSSRPESMTSSITTVSAL 191
>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
Length = 470
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 499 PSVYERTRHLDLPALYQYTLESPAGMYQGXXXRLPDLGPPCNLRVHPL 356
PS Y++ +HL Q TL S A +G GPP R HP+
Sbjct: 420 PSSYKQKKHL------QVTLSSAANTTKGASLPATKSGPPVPKRTHPV 461
>SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)
Length = 1223
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +2
Query: 26 TMAKPIDLHNRXALGVGYASVGLQHSRSAVLHAQVPPQYRTVMPPHALLNSASSGNVPHA 205
T KP+ HN AL +A + RS+ H+ P R + PP A S +V A
Sbjct: 352 TETKPVGAHNMAALNTKFAMLPTSPGRSS--HSLFPMALRPLPPPLATEESDLPSDVTMA 409
>SB_55281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 28.3 bits (60), Expect = 3.8
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 36 NRLTYTIXGHWAWGTLVW 89
N LTY HW WG W
Sbjct: 151 NTLTYCFPAHWVWGEKGW 168
>SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0)
Length = 945
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 44 DLHNRXALGVGYASVGLQHSRSAVLHAQVPPQYRTVMPPHALLNSASSGNV-PHAQG 211
+L R L G ASV H + H V P ++ V P H ++ G P QG
Sbjct: 593 ELRRRIRLNDGDASVSPTHQGVSPTHQGVSPTHQGVSPTHQGVSPTHQGGASPTHQG 649
>SB_53644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 83 SVGLQHSRSAVLHAQVPPQYRTVMPPHALLNSASSGNVPHAQGPRVHFKLQ 235
++ +QH + LH PP Y T + P+ L+ H +H K++
Sbjct: 4 TITIQHHNTIRLH---PPHYHTTLGPYVLVRIPDPNQKEHYVDYSIHRKIK 51
>SB_36430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 83 SVGLQHSRSAVLHAQVPPQYRTVMPPHALLNSASSGNVPHAQGPRVHFKLQ 235
++ +QH + LH PP Y T + P+ L+ H +H K++
Sbjct: 4 TITIQHHHTIRLH---PPHYHTTLGPYVLVRIPDPNQKEHYVDYSIHRKIK 51
>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1105
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 214 TRALQAATADYHSWKKKSPPSSLTNGNGKSIRPQ 315
+R L+ A +D H ++ KSPP S NG KS+ P+
Sbjct: 269 SRGLKHAHSDVHEYRVKSPPYS--NGE-KSVPPR 299
>SB_6184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 83 SVGLQHSRSAVLHAQVPPQYRTVMPPHALLNSASSGNVPHAQGPRVHFKLQ 235
++ +QH + LH PP Y T + P+ L+ H +H K++
Sbjct: 4 TITIQHHHTIRLH---PPHYHTTLGPYVLVRIPDPNQKEHYVDYSIHRKIK 51
>SB_39282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 83 SVGLQHSRSAVLHAQVPPQYRTVMPPHALLNSASSGNVPHAQGPRVHFKLQ 235
++ +QH + LH PP Y T + P+ L+ H +H K++
Sbjct: 4 TITIQHHHTIRLH---PPHYHTTLGPYVLVRIPDPNQKQHYVDYSIHRKIK 51
>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
Length = 269
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 262 KSPPSSLTNGNGKSIRPQSFTPGLKRSKSLTSAD 363
K+P S + G KS S TPG KR + + +D
Sbjct: 66 KTPSSHPSTGKRKSRTTPSVTPGRKRKRRIIDSD 99
>SB_10296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 92 LQHSRSAVLHAQ--VPPQYRTVMPPHALLNSASSGNVPHAQGPR 217
L +R+ + HA VPP +R + PP A G ++G R
Sbjct: 47 LVRTRNKIFHAPSYVPPYFRCLPPPENRRKGAKKGTAMTSKGMR 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,561
Number of Sequences: 59808
Number of extensions: 340914
Number of successful extensions: 962
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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