Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0298X.Seq
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF153275-1|AAD54940.1|  301|Caenorhabditis elegans transcription...    27   5.8  
AF003145-2|AAB57715.2|  301|Caenorhabditis elegans Runt related ...    27   5.8  
AB027412-1|BAA77765.1|  301|Caenorhabditis elegans RNT-1 protein.      27   5.8  
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    27   7.7  

>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 125 QVPPQYRTVMPPHALLNSASSGNVPHAQGPRV-HFKLQPQTIIP 253
           Q PP ++   PPH    + + G +PH QG +V HF+  PQ + P
Sbjct: 23  QTPPSFQ---PPHNHFRAGAPGQIPH-QGRQVAHFQ-GPQQLDP 61


>AF153275-1|AAD54940.1|  301|Caenorhabditis elegans transcription
           factor RUN protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +1

Query: 196 ATCTGATRALQAATADYHSWKKKSPPSSLTNGNGKSIR-----PQSFTPGLKRSKSLTSA 360
           +TC  +       T+D    K+ S P S+T  +  SI      P+S     +R+ S+TS+
Sbjct: 231 STCLSSPSIFITPTSDDRKLKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSS 290

Query: 361 DA 366
           ++
Sbjct: 291 NS 292


>AF003145-2|AAB57715.2|  301|Caenorhabditis elegans Runt related
           protein 1 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +1

Query: 196 ATCTGATRALQAATADYHSWKKKSPPSSLTNGNGKSIR-----PQSFTPGLKRSKSLTSA 360
           +TC  +       T+D    K+ S P S+T  +  SI      P+S     +R+ S+TS+
Sbjct: 231 STCLSSPSIFITPTSDDRKLKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSS 290

Query: 361 DA 366
           ++
Sbjct: 291 NS 292


>AB027412-1|BAA77765.1|  301|Caenorhabditis elegans RNT-1 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +1

Query: 196 ATCTGATRALQAATADYHSWKKKSPPSSLTNGNGKSIR-----PQSFTPGLKRSKSLTSA 360
           +TC  +       T+D    K+ S P S+T  +  SI      P+S     +R+ S+TS+
Sbjct: 231 STCLSSPSIFITPTSDDRKLKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSS 290

Query: 361 DA 366
           ++
Sbjct: 291 NS 292


>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical
           protein K02C4.3 protein.
          Length = 1307

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 92  LQHSRSAVLHAQVPPQYRTVMPPHALLNSASSGNVPHA 205
           LQ +  A LHAQ+ P++  V     L+ S S+   P++
Sbjct: 311 LQRAFDAALHAQLNPEFSNVSDEENLVISDSTTTAPNS 348


>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
           protein Y75B8A.13 protein.
          Length = 1420

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 421 TFPPEIQECIDKALEDPNA 477
           T PP+ +E  D ALEDP A
Sbjct: 506 TAPPQEEELFDDALEDPEA 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,619,203
Number of Sequences: 27780
Number of extensions: 231729
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)