Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0298X.Seq
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   0.78 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 0.78
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 42  LTYTIXGHWAWGTLVWD 92
           L Y I G+W++GT++ D
Sbjct: 99  LLYEISGNWSFGTIMCD 115


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = +2

Query: 47  LHNRXALGVGYASVG----LQHSRSAVLHAQVPPQYRTVMPPH 163
           LHN+   G   A +     +   R   L   VPP+Y  ++ PH
Sbjct: 3   LHNKTLAGKALAFIAEEGYVPSMREKFLGWNVPPEYSDLVRPH 45


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = +2

Query: 47  LHNRXALGVGYASVG----LQHSRSAVLHAQVPPQYRTVMPPH 163
           LHN+   G   A +     +   R   L   VPP+Y  ++ PH
Sbjct: 3   LHNKTLAGKALAFIAEEGYVPSMREKFLGWNVPPEYSDLVHPH 45


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 318 IYTRIEKVKVLNVSG 362
           I+TR+E++ VLN++G
Sbjct: 304 IFTRLEQLLVLNLAG 318


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 137 QYRTVMPPHALLNSASSGN 193
           Q + V+ PH +  +AS+GN
Sbjct: 168 QLKQVVMPHDIAVNASTGN 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,601
Number of Sequences: 438
Number of extensions: 3188
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)