Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0298X.Seq
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ...    31   0.58 
At5g24750.1 68418.m02921 expressed protein                             28   3.1  
At2g37610.1 68415.m04614 hypothetical protein                          28   3.1  
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ...    28   3.1  
At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar...    28   4.1  
At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein ...    27   7.2  
At1g69600.1 68414.m08005 zinc finger homeobox family protein / Z...    27   7.2  
At1g35660.1 68414.m04432 expressed protein                             27   9.5  

>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
           protein
          Length = 748

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 241 DYHSWKKKSPPSSL-TNGNGKSIRPQSFTPGLKRSKSLTSA 360
           D  SW +KS   SL  NGN       SF PG+  SK++  A
Sbjct: 318 DNISWSQKSSWKSLMANGNSNDFSVSSFLPGVGSSKAVQPA 358


>At5g24750.1 68418.m02921 expressed protein
          Length = 520

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 499 PSVYERTRHLDLPALYQYTLESPAG 425
           PS +ER    +LP LY+Y  E+P G
Sbjct: 158 PSGFERQFRKELPDLYKYLKEAPIG 182


>At2g37610.1 68415.m04614 hypothetical protein
          Length = 161

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 177 APPAGTCHMHRGHACTSSCNRRLSFL-EEEISAVVAD-EW 290
           AP   +  M RG   T  C RRLSFL E+++++ + D +W
Sbjct: 115 APMKRSSEMFRGR--TMYCRRRLSFLPEDDVNSFITDLQW 152


>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 917

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 256 SRNDSLRLQLEVHAWPLCMWHVPAGGAIEERVRRHHGSVLGRHLR 122
           +R+  L    ++H   +C    P G A+    RRH+  +LG H R
Sbjct: 233 TRSKMLSPSGKIHKCDICHVLFPTGQALGGHKRRHYEGLLGGHKR 277


>At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar to
           auxin response factor 10 GI:6165644 from [Arabidopsis
           thaliana]; identical to cDNA auxin response factor 10
           (ARF10) mRNA, partial cds GI:6165643
          Length = 693

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +1

Query: 265 SPPSSLTNGNGKSIRPQSFTPGLKRSKSLTSADA 366
           +PPSS  NGNGK  +P SF      +K+LT +DA
Sbjct: 98  TPPSSDGNGNGKE-KPASF------AKTLTQSDA 124


>At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 398

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -3

Query: 310 DGCSSHYHSSATTAEISSSRNDSLRL-----QLEVHAWPLCMWHVPAGGAIEERVRRHHG 146
           D  S H ++  TT   ++S + SL +       +VH   +C     +G A+   +RRH G
Sbjct: 226 DAVSLHLNNVLTTTPNNNSNHRSLVVYGKGSNNKVHECGICGAEFTSGQALGGHMRRHRG 285

Query: 145 SVL 137
           +V+
Sbjct: 286 AVV 288


>At1g69600.1 68414.m08005 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 242

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 89  GLQHSRSAVLHAQVPPQYRTVMPPHALLNSASSG-NVPHAQGPRV 220
           G +   S  + + VP  Y T  PPH ++ S SSG   P  Q P V
Sbjct: 100 GTESPPSRHVSSPVPCSYYTSAPPHHVILSLSSGFPGPSDQDPTV 144


>At1g35660.1 68414.m04432 expressed protein
          Length = 1155

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -1

Query: 141 YWGGTCACSTADLECCSPTLAYPTPNAXLLCRSIGFAIVNSFACTFS 1
           Y   +   S  DL+C    +  P      LC SI     NSF  +F+
Sbjct: 16  YLPSSVEASRDDLQCIGTMVIVPPKPVGFLCGSIPVLADNSFPASFT 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,968,407
Number of Sequences: 28952
Number of extensions: 212128
Number of successful extensions: 624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)