Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0296X.Seq
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0628 - 5460030-5462960                                           27   3.0  
10_08_0183 - 15522241-15523866                                         26   9.1  
10_01_0150 + 1747424-1747758,1748097-1748103                           26   9.1  
08_02_1613 + 28236989-28238593                                         26   9.1  
08_01_0322 - 2898272-2898475,2898548-2898730,2898817-2899702,290...    26   9.1  
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351...    26   9.1  
03_01_0354 + 2785998-2787623                                           26   9.1  
03_01_0256 - 1992298-1993878                                           26   9.1  

>08_01_0628 - 5460030-5462960
          Length = 976

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 305 VGRAVNQSRRRHRCASCEVGEGGFVLDVGLL 213
           VGR     RRR R A+ +VG+GG   D G L
Sbjct: 269 VGRRAGTGRRRRRSAT-DVGDGGGDTDYGSL 298


>10_08_0183 - 15522241-15523866
          Length = 541

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 288 PISETASLCFLRGWRGWLRAGCWP 217
           P S  A+LCF R W G+   G +P
Sbjct: 127 PTSVMATLCFFRFWLGFGIGGDYP 150


>10_01_0150 + 1747424-1747758,1748097-1748103
          Length = 113

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 153 QRWRHRLPRAFRRALQVHERGQRVVSQP*REP---GARSRLPLR 31
           +R R RLP  FRR L++   G   V+ P   P    A +R P R
Sbjct: 49  RRGRRRLPLKFRRWLRLSTAGAGAVACPPTSPRLTAASARAPPR 92


>08_02_1613 + 28236989-28238593
          Length = 534

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 288 PISETASLCFLRGWRGWLRAGCWP 217
           P S  A+LCF R W G+   G +P
Sbjct: 128 PTSVMATLCFFRFWLGFGIGGDYP 151


>08_01_0322 -
           2898272-2898475,2898548-2898730,2898817-2899702,
           2902070-2902374
          Length = 525

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -2

Query: 147 WRHRLPRAFRRALQVHERGQRVV--SQP*REPGARSRLPLRAPRCGLGA 7
           W H  P   R +     RG RV   S P R  G R R P R P   LGA
Sbjct: 30  WSHCPPH--RCSCAAPPRGGRVPGWSSPERRRGRRKRPPERTPPVTLGA 76


>04_01_0261 +
           3516461-3516629,3517729-3517823,3518724-3518834,
           3519179-3519213,3519864-3519954,3520124-3520196,
           3521127-3521257,3524325-3524720
          Length = 366

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 165 LNKKREAELSKLRRDLEEANIQHEATLANLAR 260
           L KKR  +L+KLR++ E+  +  +    +L R
Sbjct: 316 LTKKRNEDLAKLRKEKEDQQVDFKKEKEDLER 347


>03_01_0354 + 2785998-2787623
          Length = 541

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 288 PISETASLCFLRGWRGWLRAGCWP 217
           P S  A+LCF R W G+   G +P
Sbjct: 125 PTSVMATLCFFRFWLGFGIGGDYP 148


>03_01_0256 - 1992298-1993878
          Length = 526

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 288 PISETASLCFLRGWRGWLRAGCWP 217
           P S  A+LCF R W G+   G +P
Sbjct: 123 PTSVMATLCFFRFWLGFGIGGDYP 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,932,030
Number of Sequences: 37544
Number of extensions: 68707
Number of successful extensions: 264
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)