Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0296X.Seq
(346 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 45 2e-05
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.062
SB_3970| Best HMM Match : Drf_FH1 (HMM E-Value=1.2) 28 1.8
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07) 27 3.1
SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 27 4.1
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 27 5.4
SB_29374| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05) 26 9.4
SB_28036| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
SB_4104| Best HMM Match : Fzo_mitofusin (HMM E-Value=0) 26 9.4
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 44.8 bits (101), Expect = 2e-05
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 147 TSAQIELNKKREAELSKLRRDLEEANIQHEATLANL 254
T AQ+ELNKKRE+++ KLR+DLEE + HE + ++
Sbjct: 1193 TQAQMELNKKRESDIIKLRKDLEEQALAHEQAVNSM 1228
Score = 29.9 bits (64), Expect = 0.58
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 254 RKKHNDAVSEIG*QLDQLNKLKGKA*KERAQ 346
R K N + E+ +LDQ+ K K K KE+AQ
Sbjct: 1229 RSKQNQQMQEMQEELDQVKKTKAKLEKEKAQ 1259
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 33.1 bits (72), Expect = 0.062
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 147 TSAQIELNKKREAELSKLRRDLEEANIQHEATLANLARSTT 269
T+A ++ KREAEL L++ +EE + +HE ++ L + +
Sbjct: 1087 TAAATDMRVKREAELVALKKSVEEESAKHENLMSELRQKNS 1127
>SB_3970| Best HMM Match : Drf_FH1 (HMM E-Value=1.2)
Length = 558
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 159 IELNKKREAELSKLRRDLEEANIQHEATLANL 254
IEL +++ +E+S+LR +L+E+ QH + L
Sbjct: 437 IELIQQQHSEISRLRAELKESQEQHRYEVTRL 468
>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
Length = 1128
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 162 ELNKKREAELSKLRRDLEEAN 224
E N ++E E+SKL+ DLE AN
Sbjct: 290 EENGEKEQEISKLKDDLESAN 310
>SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 612
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 180 EAELSKLRRDLEEANIQHEATLAN 251
E EL K+R +LE +++Q +ATL++
Sbjct: 77 EKELGKMRAELERSSMQIDATLSD 100
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 177 REAELSKLRRDLEEANIQHE 236
R AELS+LR D + N +HE
Sbjct: 1379 RLAELSRLREDFNKVNAEHE 1398
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 26.6 bits (56), Expect = 5.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 168 NKKREAELSKLRRDLEEANIQHEAT 242
N+K + EL+ +++D +E + HE T
Sbjct: 2250 NEKLKVELANIKKDYKELQVTHEET 2274
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 165 LNKKREAELSKLRRDLEEANIQHEATLANLAR 260
L +AEL +LRRDLE + E + + R
Sbjct: 2768 LVSNNDAELDRLRRDLESKEAECEGYIKEIER 2799
>SB_29374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 168 NKKREAELSKLRRDLEEANIQ 230
N +REAEL KL ++L++A Q
Sbjct: 55 NSRREAELKKLGKELQKARSQ 75
>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1401
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 168 NKKREAELSKLRRDLEEANIQ 230
N +REAEL KL ++L++A Q
Sbjct: 411 NSRREAELKKLGKELQKARSQ 431
>SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)
Length = 769
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 252 GWRGWLRAGCWPPRG 208
G WL+AGC+P RG
Sbjct: 552 GSTDWLKAGCYPIRG 566
>SB_28036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 252 GWRGWLRAGCWPPRG 208
G WL+AGC+P RG
Sbjct: 346 GSSDWLKAGCYPIRG 360
>SB_4104| Best HMM Match : Fzo_mitofusin (HMM E-Value=0)
Length = 613
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 254 RKKHNDAVSEIG*QLDQLNK 313
+KK N+ VSEIG LD+ N+
Sbjct: 36 KKKINETVSEIGKYLDEANR 55
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,338,881
Number of Sequences: 59808
Number of extensions: 68404
Number of successful extensions: 217
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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