Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0296X.Seq
         (346 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19980.1 68414.m02503 cytomatrix protein-related contains wea...    27   3.4  
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138...    26   5.9  

>At1g19980.1 68414.m02503 cytomatrix protein-related contains weak
           similarity to CAST1 [Rattus norvegicus]
           gi|22138113|gb|AAL07517
          Length = 342

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 153 AQIELNK-KREAELSKLRRDLEEA 221
           A++E N  K++ E+SKL RDLE A
Sbjct: 233 AEMETNSTKKDEEISKLTRDLESA 256


>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 672

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 201 RRDLEEANIQHEATLANLARSTTMPSP 281
           + +L+    +H  TLANL ++  MPSP
Sbjct: 468 KAELDAYREKHFPTLANLTKTQKMPSP 494


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,770
Number of Sequences: 28952
Number of extensions: 44110
Number of successful extensions: 153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)