Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0294.Seq
         (848 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    22   5.3  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    22   5.3  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   7.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   9.3  

>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 129 KYCAALYGVN 158
           + CAALYGVN
Sbjct: 98  RLCAALYGVN 107


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 129 KYCAALYGVN 158
           + CAALYGVN
Sbjct: 98  RLCAALYGVN 107


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 618 MVRFSGSKQ*LIDNRRKQTPEQGTLPVVKTL 526
           +V   G+K  +ID  +K+ PE     +V  L
Sbjct: 153 LVALLGAKARMIDRVKKEKPEMSDSEIVAKL 183


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 281 LVNYFVCCLLS 249
           +VNY+  CLLS
Sbjct: 39  MVNYYAACLLS 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,075
Number of Sequences: 336
Number of extensions: 4372
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)