Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0294.Seq
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    27   3.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   7.8  

>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 631 QHANMVSLLQQLIQDAWQNAAFEGISMDCL 720
           QH N+VSL+Q L++D   +  FE    D L
Sbjct: 69  QHENIVSLVQVLLKDGTISMVFEYAEHDLL 98


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 595 FAATKADHVTIDQHANMVSLLQQLIQDAWQNAAFEGISM 711
           ++  + D V ID+  N+V++   + Q A   +A EGI++
Sbjct: 213 WSGNELDQVRIDEETNIVTVDDDVYQKACIRSAEEGIAV 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,331
Number of Sequences: 5004
Number of extensions: 67453
Number of successful extensions: 173
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)