Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0294.Seq
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600...    30   2.7  
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593...    29   3.5  
04_04_1245 - 32036929-32037042,32037152-32037208,32037299-320373...    29   4.7  
10_03_0023 - 7151465-7152111,7152222-7152405                           29   6.2  
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    28   8.2  

>10_08_0558 +
           18756797-18756887,18757189-18757262,18759881-18760069,
           18760190-18760309,18760457-18760521,18760684-18760828,
           18761304-18763337,18763904-18764025,18764127-18764309,
           18764635-18764690,18765086-18765141
          Length = 1044

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 96  QELSKPLIAKAAKDSLSPPTDPLVLERPP 10
           +E  K   A AA D++SP  D LV+ +PP
Sbjct: 209 EEAEKARAAAAAADAMSPMQDGLVINKPP 237


>09_04_0686 +
           19457832-19457870,19458021-19458107,19459311-19459391,
           19459463-19459489,19459589-19459651,19459768-19459854,
           19460290-19460415,19460827-19460960,19461037-19461109,
           19461307-19461372,19461778-19461816,19461927-19462051,
           19462131-19462245,19463109-19463141,19463525-19463593
          Length = 387

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +1

Query: 619 VTIDQHANMVSLLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGIIDLTVRKSRRCVVI 798
           VTI  ++ MV    Q    A    + EGIS + + L S++      I+ +VRK+ R V I
Sbjct: 247 VTITAYSKMVGYALQ----AADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTI 302

Query: 799 D 801
           +
Sbjct: 303 E 303


>04_04_1245 -
           32036929-32037042,32037152-32037208,32037299-32037375,
           32037479-32037563,32037615-32037684,32038007-32038068,
           32038249-32038336,32038685-32038815,32039182-32039213,
           32039377-32039489,32039741-32040045,32040148-32040233,
           32040350-32040425,32041002-32041097
          Length = 463

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -2

Query: 175 IAGFILLTPYSAAQYFQ*GICLSRKMTGIVKTFDRKSGKG 56
           IA  +   P   AQ +  G+  SRK  GI   F  K GKG
Sbjct: 19  IAQLLATPPLQPAQEYYNGLIQSRKHDGIRVNFSSKHGKG 58


>10_03_0023 - 7151465-7152111,7152222-7152405
          Length = 276

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 81  PLIAKAAKDSLSPPTDPLVLERPPPP 4
           PL  +    SL PP  PL L  PPPP
Sbjct: 215 PLTPQPPPSSLIPPVLPLPLLNPPPP 240


>12_02_0506 - 19794383-19794670,19795066-19795140,19795337-19798704,
            19799503-19799671,19799758-19799850
          Length = 1330

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 557  SGVCFRRLSISYCLLPLKRTM*PSISTLIW 646
            SG C R  +  Y + PL+  M P+ S LIW
Sbjct: 1203 SGCCTRLKAREYSISPLEEKMVPNSSGLIW 1232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,505,154
Number of Sequences: 37544
Number of extensions: 500808
Number of successful extensions: 1395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)