Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0294.Seq
         (848 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          24   5.1  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   5.1  
AF457565-1|AAL68795.1|  391|Anopheles gambiae TRIO protein protein.    24   5.1  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   5.1  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    24   6.7  
AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    24   6.7  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   8.9  

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 496 IKC-LWPTVERLQAIHQHNLAVKAQKMILIEP 404
           ++C L+    + +A H H+L +K+ ++ LI+P
Sbjct: 241 VRCSLYQVDPQRRAPHSHHLVIKSGELDLIDP 272


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 660 TTDSGCLAKCGVRRDQHGLPG-AGVSSGDHQRHY*FNGEKIPALRGNRLSDG 812
           T+   CL KC   +   GLPG  G+      R +    E +P  +G +   G
Sbjct: 89  TSGGCCLPKCFAEKGNRGLPGPMGLKGAKGVRGF-PGSEGLPGEKGTKGEPG 139


>AF457565-1|AAL68795.1|  391|Anopheles gambiae TRIO protein protein.
          Length = 391

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -1

Query: 584 SITGENKRRNRVRCP**KLCISCVSADAYH*MPVAHC*EVAGNPPAQSGGQSAEND 417
           S+ G      + +CP  K C + + AD Y+ +P+  C       PA   G     D
Sbjct: 45  SVKGWLSVSQQEKCPLNKYCENKIQADQYNLVPLT-CIRWRSQNPASPAGSLGGKD 99


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 502 ASALTQLMQSFHYGQRTLFRRLFSPVIDKLLFAATKADH 618
           A AL  LM++ H G +   RRL + V+D +L  A    H
Sbjct: 779 AKALGCLMRN-HSGPKCAKRRLLASVVDSILRYAAPVWH 816


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 711 GLPGAGVSSGDHQRH 755
           G+PG+ VSS  HQ+H
Sbjct: 334 GVPGSIVSSSAHQQH 348


>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 486 CGPLLRGCRQSTSTIWRSKRRK 421
           CGP +   + S ST+ R  RRK
Sbjct: 204 CGPEMNETKGSWSTVVRKNRRK 225


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 392  KVVKGFYKNHFLRFDRQIVLVDCLQPLNSG 481
            K +K  Y+   L  D ++ LVD + P N G
Sbjct: 1140 KKLKEMYQMITLGGDAELELVDSMDPFNEG 1169


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 887,474
Number of Sequences: 2352
Number of extensions: 18729
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90132318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)