Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0294.Seq
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19810.1 68418.m02354 proline-rich extensin-like family prote...    30   2.2  
At5g50850.1 68418.m06300 pyruvate dehydrogenase E1 component bet...    29   3.9  

>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 249

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 54  SLSPPTDPLVLERPPPPV 1
           +LSPP  P++L  PPPPV
Sbjct: 86  NLSPPPPPVLLSPPPPPV 103



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 54  SLSPPTDPLVLERPPPPV 1
           +LSPP  P++L  PPPPV
Sbjct: 113 NLSPPPPPVLLSPPPPPV 130



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 54  SLSPPTDPLVLERPPPPV 1
           +LSPP  P++L  PPPPV
Sbjct: 140 NLSPPPPPVLLSPPPPPV 157



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 51  LSPPTDPLVLERPPPPV 1
           LSPP  P++L  PPPPV
Sbjct: 123 LSPPPPPVLLSPPPPPV 139



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 54  SLSPPTDPLVLERPPPPV 1
           +LSPP  P+ L  PPPPV
Sbjct: 59  NLSPPPPPVNLSPPPPPV 76



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 54  SLSPPTDPLVLERPPPPV 1
           +LSPP  P+ L  PPPPV
Sbjct: 68  NLSPPPPPVNLSPPPPPV 85



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 54  SLSPPTDPLVLERPPPPV 1
           +LSPP  P+ L  PPPPV
Sbjct: 77  NLSPPPPPVNLSPPPPPV 94



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 54  SLSPPTDPLVLERPPPPV 1
           +LSPP  P+ L  PPPPV
Sbjct: 104 NLSPPPPPVNLSPPPPPV 121



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 51  LSPPTDPLVLERPPPPV 1
           LSPP  P+ L  PPPPV
Sbjct: 96  LSPPPPPVNLSPPPPPV 112



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 51  LSPPTDPLVLERPPPPV 1
           LSPP  P+ L  PPPPV
Sbjct: 132 LSPPPPPVNLSPPPPPV 148


>At5g50850.1 68418.m06300 pyruvate dehydrogenase E1 component beta
           subunit, mitochondrial / PDHE1-B (PDH2) identical to
           SP|Q38799 Pyruvate dehydrogenase E1 component beta
           subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-B)
           {Arabidopsis thaliana}
          Length = 363

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 676 AWQNAAFEGISMDCLGLASVQATTSGIIDLTVRKSRRCVVID 801
           A +  A EGIS + + L S++      I+ +VRK+ R V ++
Sbjct: 255 AAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVE 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,140,714
Number of Sequences: 28952
Number of extensions: 373665
Number of successful extensions: 1367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)