Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0293.Seq
         (845 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    24   1.7  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   3.0  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   9.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.3  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   9.3  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.3  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 645 SR*QRARRQKLNVYVGGGSLIHPNVVLTA 731
           +R ++ RR KLN Y+G  + + P V  +A
Sbjct: 34  NRAEKMRRDKLNSYIGELATLVPMVARSA 62


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 611 NSPNLVSPSTSPVVRKATPSGFRQPQP 531
           N PN  +PSTS  V++  P    Q +P
Sbjct: 32  NVPNFAAPSTSTAVQR--PQAILQVRP 56


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 448 HRRLLSGSRPETANRSHHAQAETLPMNQG 534
           HR LL  S+    N + H    ++  N+G
Sbjct: 23  HRNLLDWSKTSLDNATEHKLPISMRFNEG 51


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 763  DQSRRMGHAEHEGDISVSRQDSQ 831
            D +RRMG   ++GD  VS  D +
Sbjct: 1696 DPNRRMGPYAYKGDQWVSFDDRE 1718


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 448 HRRLLSGSRPETANRSHHAQAETLPMNQG 534
           HR LL  S+    N + H    ++  N+G
Sbjct: 23  HRNLLDWSKTSLDNATEHKLPISMRFNEG 51


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 507 GGDPANEPG 533
           GGDPA+ PG
Sbjct: 159 GGDPASSPG 167


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,057
Number of Sequences: 336
Number of extensions: 3601
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)