Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0293.Seq
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0498 + 3734498-3734976,3736176-3736800                           30   2.7  
08_02_0843 - 21759183-21759556,21760255-21762913                       29   3.5  
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    29   4.7  
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396...    28   8.1  
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969...    28   8.1  
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633...    28   8.1  

>07_01_0498 + 3734498-3734976,3736176-3736800
          Length = 367

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 409 DVGSVSDYGVIGRVAQVIVDALPFLAVGGLARKV 308
           D    +D GV+  +A  +VD   FLA GG+ R V
Sbjct: 26  DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59


>08_02_0843 - 21759183-21759556,21760255-21762913
          Length = 1010

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -3

Query: 615 GELSELGLAVHVARGPEGNAVRVPPAAALVHWQGLRLGVMGSVGGLWS 472
           G+L +LG+A++++R   G    +PP   LV  Q L L      GGL S
Sbjct: 540 GKLVKLGIALNLSRN--GLVGDIPPLGNLVELQSLDLSFNNLTGGLAS 585


>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
            14291855-14292025,14292560-14292647,14292711-14292802,
            14292920-14293384,14293860-14294633,14294890-14295087,
            14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 583  VDGETKFGEFPWMVAILKVEPVDDNEP 663
            +DGE    EFP+   +  VE  DD+EP
Sbjct: 1197 LDGEESLAEFPYASFLQTVETSDDSEP 1223


>12_01_0500 +
           3966456-3968556,3968640-3969087,3969524-3969718,
           3969891-3970119
          Length = 990

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 590 PSTSPVVRKATPSGFRQPQPWFIGRVSAW 504
           P+ +P      P G+R+P PW   R   W
Sbjct: 497 PAAAPTCLVPLPGGYRRPIPWPYSRDKIW 525


>01_06_1678 -
           39095986-39096205,39096400-39096477,39096578-39096949,
           39097374-39097671,39097867-39098077,39098331-39099023
          Length = 623

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 590 PSTSPVVRKATPSGFRQPQPWFIGRVSAW 504
           P   P  R   P G+RQP  W   R  AW
Sbjct: 142 PPPPPPCRVPPPPGYRQPMAWPARRDRAW 170


>01_03_0131 -
           12858377-12858664,12859585-12859975,12863357-12863397,
           12864745-12865419
          Length = 464

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = -3

Query: 630 DGDHPGELSELGLAVHVARGPEGNAVRVPPAAALVHWQGLRLGVMGSVGGLWSGARQQ 457
           DG   G+   LG   H   G +         A  + W G +  ++   GGLW   R++
Sbjct: 70  DGSGDGDSGRLGDGDHAGLGDDDRGGGASAMARRIQWWGGQRRLIRRWGGLWRWIRRR 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,210,011
Number of Sequences: 37544
Number of extensions: 480928
Number of successful extensions: 1332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)