Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0293.Seq
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              31   1.2  
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)                     31   1.6  
SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28)                   30   2.1  
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           30   2.1  
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)                      30   2.1  
SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)                   29   3.6  
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 549 VPPAAALVHWQGLRLGVMGSVGGLWSGARQQTSMYDEHGPL 427
           +P  A L+H Q L    + +VG + +G  +QT +   HG L
Sbjct: 848 LPALALLIHHQDLDTAALRAVGNIVTGTDEQTQVVLNHGAL 888


>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 693 GGSLIHPNVVLTAAHYVAAAK 755
           GGSLIH N VLTAAH +++ +
Sbjct: 418 GGSLIHSNWVLTAAHCISSKR 438


>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 968

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 693 GGSLIHPNVVLTAAHYVAAAK 755
           GGSLIHP  VLTA H V++ +
Sbjct: 691 GGSLIHPQWVLTATHCVSSRR 711



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 684 YVGGGSLIHPNVVLTAAHYVAAAKELRS 767
           ++ GGSL+ P  V+TAAH +A +    S
Sbjct: 91  FICGGSLVSPTWVVTAAHCIAGSSHTPS 118


>SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28)
          Length = 234

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 549 VPPAAALVHWQGLRLGVMGSVGGLWSGARQQTSMYDEHGPLPTLI 415
           +P  A L+H Q L    + +VG + +G  +QT    + G +P +I
Sbjct: 185 LPALALLIHHQDLDTAALRAVGNIVTGTDEQTQEVIDAGLIPLII 229


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +3

Query: 693 GGSLIHPNVVLTAAH 737
           GGSLIHP  VLTAAH
Sbjct: 287 GGSLIHPEWVLTAAH 301


>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 530

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +3

Query: 693 GGSLIHPNVVLTAAH 737
           GGSLIHP  VLTAAH
Sbjct: 247 GGSLIHPEWVLTAAH 261


>SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)
          Length = 386

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 693 GGSLIHPNVVLTAAHYVA 746
           GGSLIHP  +LTA H V+
Sbjct: 81  GGSLIHPQWILTATHCVS 98


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 693 GGSLIHPNVVLTAAHYV 743
           GG+L+HP  V+TAAH V
Sbjct: 167 GGTLVHPQWVITAAHCV 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,221,089
Number of Sequences: 59808
Number of extensions: 492159
Number of successful extensions: 1373
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)