Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0293.Seq
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase fa...    30   1.7  
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At1g75620.1 68414.m08786 glyoxal oxidase-related contains simila...    28   6.8  
At1g68150.1 68414.m07785 WRKY family transcription factor simila...    28   6.8  
At1g19900.1 68414.m02495 glyoxal oxidase-related contains simila...    28   9.0  

>At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana];  contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 529

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 200 LMIDSRSPVSMFCA--HAAARKPMSRSLYIFGYYSQNITLTISNSQCSS*SNR 48
           L+++   P + + A    A  KP   S+Y    YS + T T S+S C S  +R
Sbjct: 122 LVVEDNEPAAKWLALISQALNKPKQESVYSNAAYSASRTTTCSSSSCGSEESR 174


>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 576

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 505 GRDGICWRSLVGSQTADVDVR*TRATADSYID 410
           G DG+ WR+L+G+ +A  D++  +  A   I+
Sbjct: 488 GYDGVAWRALLGACSARKDLKAAKTVAAKMIE 519


>At1g75620.1 68414.m08786 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 547

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 514 TLPMNQGC--GWRNPDGVAFRTTGDVDGETK 600
           T+  N  C  G   PDG   +T GD+DGE K
Sbjct: 110 TVQSNTWCSSGGVTPDGTLLQTGGDLDGERK 140


>At1g68150.1 68414.m07785 WRKY family transcription factor similar
           to DNA-binding protein ABF2 GI:1159879 from [Avena
           fatua]
          Length = 374

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 454 RLLSGSRPETANR-SHHAQAETLPMNQGCGWR 546
           R++S S+     R S  A+ ET  MN GC WR
Sbjct: 210 RIISSSQGNRKARVSVRARCETATMNDGCQWR 241


>At1g19900.1 68414.m02495 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 548

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 514 TLPMNQGC--GWRNPDGVAFRTTGDVDGETKFGEF 612
           T+  N  C  G   PDGV  +T GD DGE K   F
Sbjct: 106 TVQSNTWCSSGSVRPDGVLVQTGGDRDGELKTRTF 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,280,427
Number of Sequences: 28952
Number of extensions: 334080
Number of successful extensions: 918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)