Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0288.Seq
(656 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like prote... 28 0.078
AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein ... 27 0.14
AY490815-1|AAR82970.1| 136|Tribolium castaneum glass protein pr... 23 2.2
AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein pr... 23 2.2
L01616-1|AAA30096.1| 74|Tribolium castaneum zinc finger protei... 23 2.9
DQ414246-1|ABD63008.1| 126|Tribolium castaneum odd-skipped prot... 23 2.9
AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc fin... 22 5.1
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 21 8.9
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 21 8.9
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 21 8.9
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 21 8.9
>AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like protein
protein.
Length = 314
Score = 27.9 bits (59), Expect = 0.078
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 485 IRSYEEAVETEERDATSRASFKCPACGKTFT 577
+ S + A++ R T FKC CG+ FT
Sbjct: 143 VLSCKSALQMHYRTHTGERPFKCKICGRAFT 173
Score = 21.0 bits (42), Expect = 8.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +2
Query: 536 RASFKCPACGKTFTD 580
R +CP C K FT+
Sbjct: 192 RVLHQCPVCHKKFTN 206
>AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein
protein.
Length = 370
Score = 27.1 bits (57), Expect = 0.14
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 494 YEEAVETEERDATSRASFKCPACGKTFT 577
Y+ ++ ER T F+C C K FT
Sbjct: 146 YKHVLQNHERTHTGEKPFECQECHKRFT 173
>AY490815-1|AAR82970.1| 136|Tribolium castaneum glass protein
protein.
Length = 136
Score = 23.0 bits (47), Expect = 2.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +2
Query: 491 SYEEAVETEERDATSRASFKCPACGKTFTD 580
S +V T R + ++C C K F+D
Sbjct: 60 SQSSSVTTHMRTHSGERPYRCRLCKKAFSD 89
>AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein
protein.
Length = 392
Score = 23.0 bits (47), Expect = 2.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +2
Query: 491 SYEEAVETEERDATSRASFKCPACGKTFTD 580
S +V T R + ++C C K F+D
Sbjct: 316 SQSSSVTTHMRTHSGERPYRCRLCKKAFSD 345
>L01616-1|AAA30096.1| 74|Tribolium castaneum zinc finger protein
protein.
Length = 74
Score = 22.6 bits (46), Expect = 2.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 518 ERDATSRASFKCPACGKTFT 577
ER T F+C C K FT
Sbjct: 1 ERTHTGEKPFECQECHKRFT 20
>DQ414246-1|ABD63008.1| 126|Tribolium castaneum odd-skipped
protein.
Length = 126
Score = 22.6 bits (46), Expect = 2.9
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +2
Query: 518 ERDATSRASFKCPACGKTF 574
ER T + C CGK F
Sbjct: 99 ERTHTDERPYSCDICGKAF 117
>AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc finger
protein protein.
Length = 456
Score = 21.8 bits (44), Expect = 5.1
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +2
Query: 521 RDATSRASFKCPACGKTF 574
R T F CP C K F
Sbjct: 367 RTHTGEKRFACPICNKRF 384
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 31
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 31
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 107
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 183
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 259
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 335
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 411
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 487
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 563
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 639
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 31
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 486 LDLMRKRLKQRNVTLQAEPVSSVQLVGRPLQ 578
+ + K L + +TL+ EP +++ V +Q
Sbjct: 49 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 79
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,361
Number of Sequences: 336
Number of extensions: 2479
Number of successful extensions: 23
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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