Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0288.Seq
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   4.2  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.6  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    25   9.6  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   9.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.6  

>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 574 KGLPTSWTLETGSACSVTFLCFNRFLIRSNLYL 476
           + + T W +   S+ S+TFLC + F++R +L++
Sbjct: 696 RSVKTFWIM---SSISLTFLCISCFIMRHHLFV 725


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 68  TTTKLEEISIPESPRTTT 121
           TTT L  +++ ESPRT T
Sbjct: 387 TTTSLSNMTVAESPRTDT 404


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 135 IEKVKVVVLGDSGMLISSNFVVVHL 61
           +EKVK  V+G SGM +S++ +  H+
Sbjct: 736 VEKVKPDVIGVSGMSVSAHKIRQHV 760


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 23/94 (24%), Positives = 44/94 (46%)
 Frame = +3

Query: 264 IVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQVRLKMETGLDGKAQKVNYY 443
           I+   ++N C  +  I +LLK +R  L+  +S + N  F ++R +     D   QK    
Sbjct: 87  ILSQFMQNICFHDFTIQDLLKPDRNRLQLILSAVIN--FAKLREERLQQFDDDIQKRESL 144

Query: 444 FINYKTFVNVVKYKLDLMRKRLKQRNVTLQAEPV 545
               +T+  +   + DL  K L  ++  L++E +
Sbjct: 145 L---ETYTLLDAQRKDLEEKVLLSQDRKLESEAI 175


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 500 EAVETEERDATSRASFKCPACGKTFTDLEV 589
           + VE   R+      + CP C K F+ L+V
Sbjct: 121 KTVEDRMRNDFDSKGYVCPFCNKKFSSLDV 150


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 158  NFFNEWLRLRK*RLW 114
            ++ N+WLR+RK R W
Sbjct: 1332 DYLNKWLRMRKKRNW 1346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,855
Number of Sequences: 5004
Number of extensions: 44263
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)