Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0288.Seq
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0224 + 15059904-15059910,15059955-15060185,15060345-150604...    31   0.81 
02_02_0713 + 13209130-13209691,13209731-13209850,13209896-132103...    29   4.3  
06_03_1297 + 29110432-29110542,29110613-29110804,29110893-291109...    28   7.5  

>11_04_0224 +
           15059904-15059910,15059955-15060185,15060345-15060424,
           15060497-15060547,15060548-15060670,15062151-15062184,
           15062363-15062441,15062779-15062848,15075787-15075889,
           15076247-15076284,15076449-15076550,15077027-15077107,
           15077506-15077657,15077731-15077857,15078193-15078311,
           15078636-15078749,15079001-15079214
          Length = 574

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 354 ISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRK 503
           + I  NDK ++  L +  G  GK  + NY     K   + V+Y L LMR+
Sbjct: 409 LKIWANDKTVRESLGVHKGTVGKWTRCNYDIDYIKDVYSTVEYHLTLMRE 458


>02_02_0713 +
           13209130-13209691,13209731-13209850,13209896-13210314,
           13210485-13210750,13211381-13211620,13212084-13212876
          Length = 799

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +3

Query: 324 KFERKMLRARISILKNDKFIQVRLKMETGLD--GKAQKVNYYFINYKTFVNVVKYKLDLM 497
           + E    R+   +   D    +RL  +T LD     ++  YY ++ + + +  +Y  +L+
Sbjct: 474 RHEESSTRSSTDVSMEDAKALLRLLNDTDLDLVSDRERQAYYMLSDREYAHTREYSPELL 533

Query: 498 RKRLKQRNVTLQAEPVSSVQLVGR 569
           +KR    +    A PV    L+ R
Sbjct: 534 KKRQWLESTKFSA-PVECTSLITR 556


>06_03_1297 +
           29110432-29110542,29110613-29110804,29110893-29110976,
           29111115-29111191,29111410-29111476,29111640-29111697,
           29111823-29111890,29111981-29112043,29112549-29112651,
           29112685-29112845,29112934-29113053,29113300-29113356,
           29113646-29113809,29113896-29114055,29114720-29114803,
           29115074-29115196,29115368-29115498,29115577-29115658,
           29115876-29115963,29116143-29116186,29116264-29116387,
           29116450-29116537,29116649-29116849,29116894-29117104,
           29117383-29117454,29117587-29117790,29117959-29118087
          Length = 1021

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 228 SRQRLLHNRDALIVDMLVRNPCMKEDDICELLKFERKMLRARISILKND 374
           S Q LLH R A++    V+   +  D +  LLK+    +  R SIL+ +
Sbjct: 69  SSQGLLHIRRAILDCGAVQTDALTVDPLASLLKYHETAVVPRESILRTE 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,072,678
Number of Sequences: 37544
Number of extensions: 240032
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)